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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658353 (10 seq.)
>WENV181407571
OGCG01042938
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
76
5
-
Val
TAC
[ENA]
¢þ
>C08005577
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
545814
545885
+
Val
TAC
[Ensembl]
¡û
>W09107140
ABFI01000017
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
8346
8275
-
Val
TAC
[ENA]
¡û
>C151003646
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
536293
536364
+
Val
TAC
[Ensembl]
¡û
>C151003690
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
536346
536417
+
Val
TAC
[Ensembl]
¡û
>ENV09004125
ADKI01000705
Hot springs metagenome ctg_1106445180384
1420
1349
-
Val
TAC
[ENA]
¡û
>W10115191
ADJO01000003
Aquificota
Hydrogenobaculum sp. SN [ADJO]
124372
124443
+
Val
TAC
[ENA]
¡û
>W11118777
ADJO01000003
Aquificota
Hydrogenobaculum sp. SN [ADJO]
124372
124443
+
Val
TAC
[ENA]
¡û
>C131013386
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
536319
536390
+
Val
TAC
[Ensembl]
¡û
>C131013697
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
536286
536357
+
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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