This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658386 (82 seq.)
>C015854
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3111841
3111915
+
Gln
TTG
[Ensembl]
¡û
>C015857
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3120279
3120353
+
Gln
TTG
[Ensembl]
¡û
>C015858
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3120390
3120464
+
Gln
TTG
[Ensembl]
¡û
>W141223702
BAEK01000020
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
166365
166439
+
Gln
TTG
[ENA]
¡û
>W141223705
BAEK01000020
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
174977
175051
+
Gln
TTG
[ENA]
¡û
>W141223706
BAEK01000020
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
175088
175162
+
Gln
TTG
[ENA]
¡û
>W141223787
BAEM01000056
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
103520
103594
+
Gln
TTG
[ENA]
¡û
>W141223790
BAEM01000056
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
112148
112222
+
Gln
TTG
[ENA]
¡û
>W141223791
BAEM01000056
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
112259
112333
+
Gln
TTG
[ENA]
¡û
>W141223889
BAEP01000003
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
41717
41643
-
Gln
TTG
[ENA]
¡û
>W141223892
BAEP01000003
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
33612
33538
-
Gln
TTG
[ENA]
¡û
>W141223893
BAEP01000003
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
33503
33429
-
Gln
TTG
[ENA]
¡û
>W141224022
BAER01000115
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
111509
111435
-
Gln
TTG
[ENA]
¡û
>W141224025
BAER01000115
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
102993
102919
-
Gln
TTG
[ENA]
¡û
>W141224026
BAER01000115
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
102881
102807
-
Gln
TTG
[ENA]
¡û
>WENV182540194
OJAE01001801
[OJAE] seawater metagenome; Sea water
479
553
+
Gln
TTG
[ENA]
¢þ
>WENV182541195
OJAS01002514
[OJAS] seawater metagenome; Sea water
1037
963
-
Gln
TTG
[ENA]
¢þ
>WENV182541935
OJAV01000033
[OJAV] seawater metagenome; Sea water
8392
8318
-
Gln
TTG
[ENA]
¢þ
>WENV182542345
OJAY01000148
[OJAY] seawater metagenome; Sea water
8786
8712
-
Gln
TTG
[ENA]
¢þ
>WENV182542688
OJAZ01000644
[OJAZ] seawater metagenome; Sea water
11134
11060
-
Gln
TTG
[ENA]
¢þ
>WENV182543471
OJBB01000592
[OJBB] seawater metagenome; Sea water
11158
11084
-
Gln
TTG
[ENA]
¢þ
>WENV182543647
OJBC01000068
[OJBC] seawater metagenome; Sea water
39986
40060
+
Gln
TTG
[ENA]
¢þ
>WENV182544198
OJBE01005267
[OJBE] seawater metagenome; Sea water
868
942
+
Gln
TTG
[ENA]
¢þ
>WENV182546798
OJBP01003816
[OJBP] seawater metagenome; Sea water
165
91
-
Gln
TTG
[ENA]
¢þ
>WENV182546906
OJBQ01001163
[OJBQ] seawater metagenome; Sea water
1211
1137
-
Gln
TTG
[ENA]
¢þ
>WENV182547031
OJBR01000211
[OJBR] seawater metagenome; Sea water
33116
33190
+
Gln
TTG
[ENA]
¢þ
>WENV182548797
OJBX01000186
[OJBX] seawater metagenome; Sea water
8977
8903
-
Gln
TTG
[ENA]
¢þ
>WENV182549724
OJBY01013391
[OJBY] seawater metagenome; Sea water
963
889
-
Gln
TTG
[ENA]
¢þ
>WENV182549800
OJBZ01000046
[OJBZ] seawater metagenome; Sea water
74927
75001
+
Gln
TTG
[ENA]
¢þ
>WENV182550840
OJCB01000656
[OJCB] seawater metagenome; Sea water
3029
3103
+
Gln
TTG
[ENA]
¢þ
>WENV182551699
OJCG01002860
[OJCG] seawater metagenome; Sea water
449
523
+
Gln
TTG
[ENA]
¢þ
>WENV182552410
OJCK01000038
[OJCK] seawater metagenome; Sea water
8702
8628
-
Gln
TTG
[ENA]
¢þ
>WENV182554690
OJCW01001476
[OJCW] seawater metagenome; Sea water
3115
3189
+
Gln
TTG
[ENA]
¢þ
>WENV182555191
OJCY01008213
[OJCY] seawater metagenome; Sea water
52
126
+
Gln
TTG
[ENA]
¢þ
>WENV182556005
OJDF01001057
[OJDF] seawater metagenome; Sea water
1772
1698
-
Gln
TTG
[ENA]
¢þ
>WENV182556769
OJDH01000061
[OJDH] seawater metagenome; Sea water
15230
15156
-
Gln
TTG
[ENA]
¢þ
>WENV182556772
OJDH01000061
[OJDH] seawater metagenome; Sea water
7126
7052
-
Gln
TTG
[ENA]
¢þ
>WENV182556909
OJDI01000014
[OJDI] seawater metagenome; Sea water
8615
8541
-
Gln
TTG
[ENA]
¢þ
>WENV182558612
OJDN01000021
[OJDN] seawater metagenome; Sea water
7913
7839
-
Gln
TTG
[ENA]
¢þ
>WENV182559761
OJDQ01003143
[OJDQ] seawater metagenome; Sea water
1763
1837
+
Gln
TTG
[ENA]
¢þ
>WENV182562375
OJDZ01001584
[OJDZ] seawater metagenome; Sea water
1454
1380
-
Gln
TTG
[ENA]
¢þ
>WENV182564007
OJED01019104
[OJED] seawater metagenome; Sea water
489
415
-
Gln
TTG
[ENA]
¢þ
>WENV182566279
OJEJ01006090
[OJEJ] seawater metagenome; Sea water
736
662
-
Gln
TTG
[ENA]
¢þ
>WENV182566786
OJEM01004433
[OJEM] seawater metagenome; Sea water
80
154
+
Gln
TTG
[ENA]
¢þ
>WENV182568204
OJER01002035
[OJER] seawater metagenome; Sea water
1099
1025
-
Gln
TTG
[ENA]
¢þ
>WENV182570674
OJFE01001636
[OJFE] seawater metagenome; Sea water
80
154
+
Gln
TTG
[ENA]
¢þ
>WENV182571000
OJFG01000021
[OJFG] seawater metagenome; Sea water
103529
103603
+
Gln
TTG
[ENA]
¢þ
>WENV182572135
OJFL01000460
[OJFL] seawater metagenome; Sea water
8515
8441
-
Gln
TTG
[ENA]
¢þ
>WENV182573769
OJFP01029540
[OJFP] seawater metagenome; Sea water
468
542
+
Gln
TTG
[ENA]
¢þ
>WENV182574178
OJFR01000464
[OJFR] seawater metagenome; Sea water
13308
13382
+
Gln
TTG
[ENA]
¢þ
>WENV182574715
OJFS01000729
[OJFS] seawater metagenome; Sea water
66
140
+
Gln
TTG
[ENA]
¢þ
>WENV182575568
OJFV01000085
[OJFV] seawater metagenome; Sea water
49012
48938
-
Gln
TTG
[ENA]
¢þ
>WENV182575593
OJFV01000246
[OJFV] seawater metagenome; Sea water
16063
16137
+
Gln
TTG
[ENA]
¢þ
>WENV182575885
OJFX01000111
[OJFX] seawater metagenome; Sea water
16356
16430
+
Gln
TTG
[ENA]
¢þ
>WENV182578440
OJGO01000013
[OJGO] seawater metagenome; Sea water
55245
55319
+
Gln
TTG
[ENA]
¢þ
>WENV182581397
OJGX01004836
[OJGX] seawater metagenome; Sea water
670
596
-
Gln
TTG
[ENA]
¢þ
>WENV182582765
OJHC01000020
[OJHC] seawater metagenome; Sea water
8615
8541
-
Gln
TTG
[ENA]
¢þ
>WENV182584346
OJHG01000025
[OJHG] seawater metagenome; Sea water
103663
103737
+
Gln
TTG
[ENA]
¢þ
>WENV182585792
OJHI01011329
[OJHI] seawater metagenome; Sea water
111
185
+
Gln
TTG
[ENA]
¢þ
>WENV182586517
OJHK01000863
[OJHK] seawater metagenome; Sea water
13307
13381
+
Gln
TTG
[ENA]
¢þ
>WENV182588569
OJHU01003835
[OJHU] seawater metagenome; Sea water
622
548
-
Gln
TTG
[ENA]
¢þ
>WENV182591409
OJIO01000030
[OJIO] seawater metagenome; Sea water
12652
12578
-
Gln
TTG
[ENA]
¢þ
>WENV182592441
OJIR01000760
[OJIR] seawater metagenome; Sea water
972
1046
+
Gln
TTG
[ENA]
¢þ
>WENV183055187
OLGX01000094
[OLGX] seawater metagenome; Sea water
48548
48622
+
Gln
TTG
[ENA]
¢þ
>WENV183057243
OLHL01000003
[OLHL] seawater metagenome; Sea water
8602
8528
-
Gln
TTG
[ENA]
¢þ
>WENV183057863
OLHM01013378
[OLHM] seawater metagenome; Sea water
798
724
-
Gln
TTG
[ENA]
¢þ
>WENV183058095
OLHN01003590
[OLHN] seawater metagenome; Sea water
1747
1821
+
Gln
TTG
[ENA]
¢þ
>WENV183059735
OLHV01001250
[OLHV] seawater metagenome; Sea water
3314
3388
+
Gln
TTG
[ENA]
¢þ
>WENV183062212
OLID01000551
[OLID] seawater metagenome; Sea water
8505
8431
-
Gln
TTG
[ENA]
¢þ
>WENV183522231
OMOM01000989
[OMOM] seawater metagenome; Sea water
6787
6713
-
Gln
TTG
[ENA]
¢þ
>WENV170024578
BCQL01078023
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
416
342
-
Gln
TTG
[ENA]
¢þ
>WENV170025141
BCQL01231075
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
3
77
+
Gln
TTG
[ENA]
¢þ
>WENV170025142
BCQL01231075
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
112
186
+
Gln
TTG
[ENA]
¢þ
>W09103798
AAKP01000057
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
11890
11964
+
Gln
TTG
[ENA]
¡û
>W09103799
AAKP01000062
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
87
161
+
Gln
TTG
[ENA]
¡û
>W09103800
AAKP01000062
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
198
272
+
Gln
TTG
[ENA]
¡û
>C11109481
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1995784
1995710
-
Gln
TTG
[Ensembl]
¡û
>C11109484
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1987165
1987091
-
Gln
TTG
[Ensembl]
¡û
>C11109485
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1987054
1986980
-
Gln
TTG
[Ensembl]
¡û
>W1511348369
JRKG01000050
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
154397
154323
-
Gln
TTG
[ENA]
¡û
>W1511348372
JRKG01000050
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
146292
146218
-
Gln
TTG
[ENA]
¡û
>W1511348373
JRKG01000050
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
146183
146109
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK