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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658406 (44 seq.)
>C171035045
CP015010
Alphaproteobacteria
Rickettsia bellii [CP015010]
1143523
1143597
+
Asn
GTT
-
¡û
>C171035072
CP015012
Alphaproteobacteria
Rickettsia amblyommatis [CP015012]
891241
891315
+
Asn
GTT
-
¡û
>W131111741
APMN01000009
Alphaproteobacteria
Rickettsia prowazekii str. GvF12 [APMN]
15136
15210
+
Asn
GTT
[ENA]
¡û
>W131111771
APMO01000008
Alphaproteobacteria
Rickettsia prowazekii str. Cairo 3 [APMO]
15150
15224
+
Asn
GTT
[ENA]
¡û
>C018305
CP000087
Alphaproteobacteria
Rickettsia bellii RML369-C [CP000087]
1015020
1014946
-
Asn
GTT
[Ensembl]
¡û
>C018578
CP000053
Alphaproteobacteria
Rickettsia felis URRWXCal2 URRWXCal2; California 2 [CP000053]
1061398
1061324
-
Asn
GTT
[Ensembl]
¡û
>C019076
AJ235269
Alphaproteobacteria
Rickettsia prowazekii [AJ235269]
338593
338667
+
Asn
GTT
[Ensembl]
¡û
>C019355
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
336968
337042
+
Asn
GTT
[Ensembl]
¡û
>w017280
AARC01000001
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [AARC]
765566
765642
+
Asn
GTT
[ENA]
¡û
>C08008026
CP000849
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [CP000849]
765567
765641
+
Asn
GTT
[Ensembl]
¡û
>W141255343
CBUA010000041
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [CBUA]
17874
17948
+
Asn
GTT
[ENA]
¡û
>W141264828
CCER01000011
Alphaproteobacteria
Rickettsia aeschlimannii [CCER]
197618
197692
+
Asn
GTT
[ENA]
¡û
>W141266217
CCMG01000017
Alphaproteobacteria
Rickettsia tamurae [CCMG]
240
314
+
Asn
GTT
[ENA]
¡û
>W141464103
JFKF01000034
Alphaproteobacteria
Rickettsia tamurae ISO7 [JFKF]
13011
13085
+
Asn
GTT
[ENA]
¡û
>C191225748
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
336562
336636
+
Asn
GTT
-
¡û
>W09127578
ACLC01000089
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes scapularis [ACLC]
2526
2600
+
Asn
GTT
[ENA]
¡û
>W1910831800
MWZE01000039
Alphaproteobacteria
Rickettsia endosymbiont of Culicoides newsteadi of Culicoides newsteadi RiCNE [MWZE]
1573
1499
-
Asn
GTT
[ENA]
¡û
>C151094932
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
454709
454783
+
Asn
GTT
-
¡û
>C151104102
LN794217
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [LN794217]
693937
694011
+
Asn
GTT
[Ensembl]
¡û
>C11118787
CP001584
Alphaproteobacteria
Rickettsia prowazekii str. Rp22 [CP001584]
338570
338644
+
Asn
GTT
[Ensembl]
¡û
>W1511365684
JSEL01000026
Alphaproteobacteria
Rickettsia felis LSU-Lb [JSEL]
24923
24997
+
Asn
GTT
[ENA]
¡û
>W1511365716
JSEM01000014
Alphaproteobacteria
Rickettsia felis str. LSU [JSEM]
25787
25861
+
Asn
GTT
[ENA]
¡û
>W1511365717
JSEM01000014
Alphaproteobacteria
Rickettsia felis str. LSU [JSEM]
26687
26613
-
Asn
GTT
[ENA]
¡û
>W1511489418
JWSW01000004
Alphaproteobacteria
Rickettsia asembonensis asemboensis NMRCii [JWSW]
52638
52712
+
Asn
GTT
[ENA]
¡û
>W1511574232
LANQ01000001
Alphaproteobacteria
Rickettsia felis str. Pedreira [LANQ]
1254747
1254821
+
Asn
GTT
[ENA]
¡û
>W1511574257
LANR01000001
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Ac/Pa [LANR]
648067
648141
+
Asn
GTT
[ENA]
¡û
>W1511574845
LAOH01000039
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Darkwater [LAOH]
3156
3230
+
Asn
GTT
[ENA]
¡û
>W1511574890
LAOI01000001
Alphaproteobacteria
Rickettsia bellii str. RML An4 [LAOI]
681552
681478
-
Asn
GTT
[ENA]
¡û
>W1511574903
LAOJ01000001
Alphaproteobacteria
Rickettsia bellii str. RML Mogi [LAOJ]
361854
361928
+
Asn
GTT
[ENA]
¡û
>W1511575085
LAOP01000001
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes pacificus of Ixodes pacificus Humboldt [LAOP]
1059326
1059400
+
Asn
GTT
[ENA]
¡û
>C121011198
CP003334
Alphaproteobacteria
Rickettsia amblyommatis str. GAT-30V [CP003334]
454717
454791
+
Asn
GTT
[Ensembl]
¡û
>C121012155
CP003391
Alphaproteobacteria
Rickettsia prowazekii str. Chernikova [CP003391]
336785
336859
+
Asn
GTT
[Ensembl]
¡û
>C121012188
CP003392
Alphaproteobacteria
Rickettsia prowazekii str. Katsinyian [CP003392]
338594
338668
+
Asn
GTT
[Ensembl]
¡û
>C121012221
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
338593
338667
+
Asn
GTT
[Ensembl]
¡û
>C121012254
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
336790
336864
+
Asn
GTT
[Ensembl]
¡û
>C121012291
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
680766
680840
+
Asn
GTT
[Ensembl]
¡û
>C121012320
CP003396
Alphaproteobacteria
Rickettsia prowazekii str. RpGvF24 [CP003396]
338825
338899
+
Asn
GTT
[Ensembl]
¡û
>C121012351
CP003397
Alphaproteobacteria
Rickettsia typhi str. TH1527 [CP003397]
336982
337056
+
Asn
GTT
[Ensembl]
¡û
>C121012384
CP003398
Alphaproteobacteria
Rickettsia typhi str. B9991CWPP [CP003398]
337399
337473
+
Asn
GTT
[Ensembl]
¡û
>C161030377
CP010969
Alphaproteobacteria
Rickettsia conorii subsp. raoultii Khabarovsk [CP010969]
382318
382392
+
Asn
GTT
[Ensembl]
¡û
>C161078726
CP014865
Alphaproteobacteria
Rickettsia prowazekii Naples-1 [CP014865]
338569
338643
+
Asn
GTT
-
¡û
>C131014587
CP004888
Alphaproteobacteria
Rickettsia prowazekii str. NMRC Madrid E [CP004888]
956966
956892
-
Asn
GTT
[Ensembl]
¡û
>C131014628
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
430605
430531
-
Asn
GTT
[Ensembl]
¡û
>WENV000760
AACY020024558
Marine microbial communities from Global Ocean Sampling (GOS)
2078
2004
-
Asn
GTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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