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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658416 (22 seq.)
>W1711335788
MBRD01000031
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
194405
194476
+
Cys
GCA
[ENA]
¡û
>W141038407
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
3733074
3733145
+
Cys
GCA
[ENA]
¡û
>WENV180659288
OCVV010845136
[OCVV] gut metagenome; gut
127
53
-
Cys
GCA
[ENA]
¢þ
>WENV180659290
OCVV010845136
[OCVV] gut metagenome; gut
127
53
-
Cys
GCA
[ENA]
¢þ
>WENV170954413
MJUG01006994
[MJUG] soil metagenome; viral particles from soil sample MS1
443
372
-
Cys
GCA
[ENA]
¢þ
>WENV170983463
MWVV01037056
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
218
147
-
Cys
GCA
[ENA]
¢þ
>WENV170995046
MWWE01130380
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
170
241
+
Cys
GCA
[ENA]
¢þ
>C181078438
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
3330236
3330165
-
Cys
GCA
-
¡û
>C191001293
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
1556585
1556514
-
Cys
GCA
-
¡û
>W1910008372
BDGE01000010
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
6800
6729
-
Cys
GCA
[ENA]
¡û
>W1911638347
PVWL01000166
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
1015
1086
+
Cys
GCA
[ENA]
¡û
>W1911638361
PVWM01000051
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
9477
9548
+
Cys
GCA
[ENA]
¡û
>W1911638409
PVWN01000025
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
39444
39515
+
Cys
GCA
[ENA]
¡û
>W1911641162
PYCI01000010
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
30579
30508
-
Cys
GCA
[ENA]
¡û
>W1511501670
JXCA01000011
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
846631
846560
-
Cys
GCA
[ENA]
¡û
>W1511535287
JYON01000006
Cyanobacteriota
Aliterella atlantica CENA595 [JYON]
198365
198436
+
Cys
GCA
[ENA]
¡û
>C161002493
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
1848918
1848989
+
Cys
GCA
[Ensembl]
¡û
>C161038921
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
3486664
3486593
-
Cys
GCA
[Ensembl]
¡û
>W1610084872
CDHJ01000145
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
5639
5566
-
Cys
GCA
[ENA]
¡û
>C131004541
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
1189923
1189851
-
Cys
GCA
[Ensembl]
¡û
>W1611066495
MBRD01000031
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
194405
194476
+
Cys
GCA
[ENA]
¡û
>W1710089734
CDHJ01000145
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
5639
5566
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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