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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659477 (45 seq.)
>W1711018286
LQWW01000001
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
16123
16197
+
Thr
GGT
[ENA]
¡û
>W1711019428
LQXX01000001
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
49787
49861
+
Thr
GGT
[ENA]
¡û
>W1711456308
MJAP01000034
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
229857
229783
-
Thr
GGT
[ENA]
¡û
>W1711766195
MUYE01000001
Alphaproteobacteria
Bartonella sp. AR 15-3 [MUYE]
1289201
1289275
+
Thr
GGT
[ENA]
¡û
>C171099690
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
1213418
1213492
+
Thr
GGT
-
¡û
>C171099772
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
1286693
1286767
+
Thr
GGT
-
¡û
>C171099813
CP019787
Alphaproteobacteria
Bartonella sp. JB15 [CP019787]
1173148
1173222
+
Thr
GGT
-
¡û
>C171099853
CP019788
Alphaproteobacteria
Bartonella sp. JB63 [CP019788]
1172817
1172891
+
Thr
GGT
-
¡û
>W131044203
AMQK01000003
Alphaproteobacteria
Bartonella bacilliformis INS [AMQK]
169194
169120
-
Thr
GGT
[ENA]
¡û
>C002034
CP000524
Alphaproteobacteria
Bartonella bacilliformis KC583 KC583; ATCC 35685 [CP000524]
201897
201823
-
Thr
GGT
[Ensembl]
¡û
>C004005
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
1342282
1342208
-
Thr
GGT
[Ensembl]
¡û
>W141009619
AHPB01000008
Alphaproteobacteria
Bartonella quintana JK 39 [AHPB]
7270
7196
-
Thr
GGT
[ENA]
¡û
>W141009686
AHPC01000004
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
17114
17040
-
Thr
GGT
[ENA]
¡û
>W141009736
AHPD01000019
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
3014
3088
+
Thr
GGT
[ENA]
¡û
>W141009756
AHPE01000011
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
3012
3086
+
Thr
GGT
[ENA]
¡û
>W141009790
AHPF01000002
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
17062
16988
-
Thr
GGT
[ENA]
¡û
>W141009850
AHPG01000008
Alphaproteobacteria
Bartonella quintana JK 31 [AHPG]
7198
7272
+
Thr
GGT
[ENA]
¡û
>W141009903
AHPH01000014
Alphaproteobacteria
Bartonella quintana JK 19 [AHPH]
6351
6425
+
Thr
GGT
[ENA]
¡û
>W141010026
AHPK01000015
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
20699
20625
-
Thr
GGT
[ENA]
¡û
>W141071151
ASIS01000003
Alphaproteobacteria
Bartonella bacilliformis Hosp800-02 [ASIS]
25246
25172
-
Thr
GGT
[ENA]
¡û
>W141071189
ASIT01000003
Alphaproteobacteria
Bartonella bacilliformis CUSCO5 [ASIT]
43778
43704
-
Thr
GGT
[ENA]
¡û
>W141071230
ASIU01000004
Alphaproteobacteria
Bartonella bacilliformis Cond044 [ASIU]
5652
5578
-
Thr
GGT
[ENA]
¡û
>W141071272
ASIV01000001
Alphaproteobacteria
Bartonella bacilliformis Ver097 [ASIV]
454881
454807
-
Thr
GGT
[ENA]
¡û
>W141071312
ASIW01000004
Alphaproteobacteria
Bartonella bacilliformis Peru38 [ASIW]
9294
9220
-
Thr
GGT
[ENA]
¡û
>W141071353
ASIX01000002
Alphaproteobacteria
Bartonella bacilliformis VAB9028 [ASIX]
43006
42932
-
Thr
GGT
[ENA]
¡û
>W141071394
ASIY01000003
Alphaproteobacteria
Bartonella bacilliformis Ver075 [ASIY]
1810
1736
-
Thr
GGT
[ENA]
¡û
>W141071435
ASIZ01000003
Alphaproteobacteria
Bartonella bacilliformis CAR600-02 [ASIZ]
25266
25192
-
Thr
GGT
[ENA]
¡û
>W141222623
AZZV01000007
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
7307
7381
+
Thr
GGT
[ENA]
¡û
>W141222643
AZZW01000002
Alphaproteobacteria
Bartonella quintana JK 73rel [AZZW]
16747
16673
-
Thr
GGT
[ENA]
¡û
>W141222690
AZZX01000002
Alphaproteobacteria
Bartonella quintana JK 73 [AZZX]
16745
16671
-
Thr
GGT
[ENA]
¡û
>W141222761
AZZY01000005
Alphaproteobacteria
Bartonella quintana JK 12 [AZZY]
7286
7212
-
Thr
GGT
[ENA]
¡û
>W141222775
AZZZ01000003
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
7286
7212
-
Thr
GGT
[ENA]
¡û
>WENV170674873
LCWY01013840
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
404
478
+
Thr
GGT
[ENA]
¢þ
>WENV170675197
LCWZ01014871
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
404
478
+
Thr
GGT
[ENA]
¢þ
>C181037923
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
1270441
1270515
+
Thr
GGT
-
¡û
>W09104845
AANF01000003
Alphaproteobacteria
Bartonella bacilliformis KC583 [AANF]
241258
241184
-
Thr
GGT
[ENA]
¡û
>C181209328
LS483373
Alphaproteobacteria
Bartonella quintana NCTC12899 [LS483373]
1188315
1188241
-
Thr
GGT
-
¡û
>W141554742
JHPP01000004
Alphaproteobacteria
Bartonella bacilliformis San Pedro600-02 [JHPP]
15327
15401
+
Thr
GGT
[ENA]
¡û
>W141554781
JHPQ01000008
Alphaproteobacteria
Bartonella bacilliformis str. Heidi Mejia [JHPQ]
2615
2689
+
Thr
GGT
[ENA]
¡û
>W141554826
JHPR01000015
Alphaproteobacteria
Bartonella bacilliformis Peru-18 [JHPR]
2321
2395
+
Thr
GGT
[ENA]
¡û
>C151067965
CP010401
Alphaproteobacteria
Bartonella ancashensis 20.00 [CP010401]
307378
307452
+
Thr
GGT
-
¡û
>C161064380
CP014012
Alphaproteobacteria
Bartonella bacilliformis ATCC 35685D-5 [CP014012]
245420
245346
-
Thr
GGT
-
¡û
>C131006636
CP003784
Alphaproteobacteria
Bartonella quintana RM-11 [CP003784]
1347265
1347191
-
Thr
GGT
[Ensembl]
¡û
>W1610866762
LQWW01000001
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
16123
16197
+
Thr
GGT
[ENA]
¡û
>W1610867716
LQXX01000001
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
49787
49861
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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