This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659502 (16 seq.)
>C171032867
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
1485879
1485953
+
Val
CAC
-
¡û
>C171032961
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
1175757
1175683
-
Val
CAC
-
¡û
>C171033122
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
956776
956702
-
Val
CAC
-
¡û
>W141200355
AYXS01000016
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
7134
7208
+
Val
CAC
[ENA]
¡û
>W141226084
BAJT01000018
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
48687
48761
+
Val
CAC
[ENA]
¡û
>W141226172
BAJV01000013
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
66353
66279
-
Val
CAC
[ENA]
¡û
>W141227263
BAKW01000009
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
39385
39459
+
Val
CAC
[ENA]
¡û
>W141229561
BAND01000005
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
77851
77777
-
Val
CAC
[ENA]
¡û
>W141247913
CBLX010000001
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
1439
1365
-
Val
CAC
[ENA]
¡û
>WENV170002016
AGFT01073106
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
221
295
+
Val
CAC
[ENA]
¢þ
>C191157868
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
1855724
1855798
+
Val
CAC
-
¡û
>C191158427
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
1679062
1679136
+
Val
CAC
-
¡û
>W141726103
JNAB01000027
Alphaproteobacteria
Kozakia baliensis [JNAB]
1851
1777
-
Val
CAC
[ENA]
¡û
>W1911597828
PNQZ01000031
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
5506
5432
-
Val
CAC
[ENA]
¡û
>WENV11102088
AGFT01073106
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
221
295
+
Val
CAC
[ENA]
¡û
>C161001110
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1746939
1746865
-
Val
CAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK