This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659595 (56 seq.)
>W1710892398
LNDR01000392
Alphaproteobacteria
Rhizobiales bacterium Ga0077524 [LNDR]
21776
21850
+
Gln
TTG
[ENA]
¡û
>W1710893734
LNFA01000281
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
30634
30560
-
Gln
TTG
[ENA]
¡û
>W1711385328
MEEB01000233
Alphaproteobacteria
Hyphomicrobium sp. SCN 65-11 [MEEB]
1629
1555
-
Gln
TTG
[ENA]
¡û
>C171100641
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
2381300
2381226
-
Gln
TTG
-
¡û
>C171119421
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
2852367
2852293
-
Gln
TTG
-
¡û
>W141224612
BAIO01000169
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
1171
1245
+
Gln
TTG
[ENA]
¡û
>WENV170000019
AERA01001033
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
1950
1876
-
Gln
TTG
[ENA]
¢þ
>W141402025
JDTI01000193
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
175060
174986
-
Gln
TTG
[ENA]
¡û
>WENV170650964
JRYE01089409
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
74
1
-
Gln
TTG
[ENA]
¢þ
>WENV170652249
JRYH01000303
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
10208
10134
-
Gln
TTG
[ENA]
¢þ
>WENV170652271
JRYH01000461
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
13341
13267
-
Gln
TTG
[ENA]
¢þ
>WENV170652754
JRYH01022563
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1359
1285
-
Gln
TTG
[ENA]
¢þ
>WENV170655105
JTFN01005143
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1569
1495
-
Gln
TTG
[ENA]
¢þ
>WENV170709336
LNFM01000267
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
215357
215431
+
Gln
TTG
[ENA]
¢þ
>WENV170710033
LNFM01001087
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5148
5222
+
Gln
TTG
[ENA]
¢þ
>WENV170711087
LNFM01003494
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
15363
15289
-
Gln
TTG
[ENA]
¢þ
>WENV170711411
LNFM01005143
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
32134
32208
+
Gln
TTG
[ENA]
¢þ
>WENV170713437
LNFM01031245
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1706
1780
+
Gln
TTG
[ENA]
¢þ
>WENV170714849
LNFM01106823
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
205
279
+
Gln
TTG
[ENA]
¢þ
>C181103429
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
3046198
3046272
+
Gln
TTG
-
¡û
>C191023946
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
819782
819856
+
Gln
TTG
-
¡û
>C191150973
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2463527
2463453
-
Gln
TTG
-
¡û
>W1910015226
BDLU01000056
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
74485
74411
-
Gln
TTG
[ENA]
¡û
>W1910015274
BDLW01000028
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
74619
74545
-
Gln
TTG
[ENA]
¡û
>W1910231987
FPEI01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
228543
228617
+
Gln
TTG
[ENA]
¡û
>W1910694720
MDTO01000020
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
4006
4080
+
Gln
TTG
[ENA]
¡û
>W1910695669
MDVZ01000295
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
7679
7753
+
Gln
TTG
[ENA]
¡û
>W1910929250
NIRT01000019
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
38776
38702
-
Gln
TTG
[ENA]
¡û
>W1910972029
NKCY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
495198
495124
-
Gln
TTG
[ENA]
¡û
>W1910990435
NKTX01000011
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
20401
20475
+
Gln
TTG
[ENA]
¡û
>W1910990497
NKTY01000023
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
30875
30801
-
Gln
TTG
[ENA]
¡û
>W1910990515
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
438765
438691
-
Gln
TTG
[ENA]
¡û
>W1910990595
NKUA01000020
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
20296
20370
+
Gln
TTG
[ENA]
¡û
>W1910990630
NKUB01000007
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
120014
119940
-
Gln
TTG
[ENA]
¡û
>W1910990687
NKUC01000031
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
20571
20645
+
Gln
TTG
[ENA]
¡û
>W1911717702
QQBI01000024
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
20355
20429
+
Gln
TTG
[ENA]
¡û
>W1810894182
QUWV01000070
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
69378
69304
-
Gln
TTG
[ENA]
¡û
>C151006036
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
3019006
3019080
+
Gln
TTG
[Ensembl]
¡û
>WENV11100377
AERA01001033
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
1950
1876
-
Gln
TTG
[ENA]
¡û
>C11109988
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
2431545
2431471
-
Gln
TTG
[Ensembl]
¡û
>W1511431887
JUFX01000245
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
22620
22694
+
Gln
TTG
[ENA]
¡û
>W11157675
AFCH01000045
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
17519
17445
-
Gln
TTG
[ENA]
¡û
>W11186785
CADP01000031
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
21847
21921
+
Gln
TTG
[ENA]
¡û
>W11186831
CADR01000013
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
25932
26006
+
Gln
TTG
[ENA]
¡û
>W11186893
CADS01000016
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
21827
21901
+
Gln
TTG
[ENA]
¡û
>W11186964
CADT01000014
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
54714
54640
-
Gln
TTG
[ENA]
¡û
>W1610041130
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
69408
69334
-
Gln
TTG
[ENA]
¡û
>W1610041261
BANI01000047
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
30556
30482
-
Gln
TTG
[ENA]
¡û
>W1610041290
BANJ01000010
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
20327
20401
+
Gln
TTG
[ENA]
¡û
>W1610070897
BCTP01000034
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
9862
9788
-
Gln
TTG
[ENA]
¡û
>W1610752664
LNDR01000392
Alphaproteobacteria
Rhizobiales bacterium Ga0077524 [LNDR]
21776
21850
+
Gln
TTG
[ENA]
¡û
>W1610754000
LNFA01000281
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
30634
30560
-
Gln
TTG
[ENA]
¡û
>W1710038328
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
69408
69334
-
Gln
TTG
[ENA]
¡û
>W1710038459
BANI01000047
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
30556
30482
-
Gln
TTG
[ENA]
¡û
>W1710038488
BANJ01000010
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
20327
20401
+
Gln
TTG
[ENA]
¡û
>W1710068219
BCTP01000034
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
9862
9788
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK