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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659653 (43 seq.)
>W1710786635
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1220047
1220121
+
Arg
CCG
[ENA]
¡û
>W1710876779
LMPN01000030
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
17205
17131
-
Arg
CCG
[ENA]
¡û
>W1711009686
LQQV01000081
Bacillota
Brevibacillus parabrevis [LQQV]
41951
42025
+
Arg
CCG
[ENA]
¡û
>W1711168685
LVYG01000034
Bacillota
Brevibacillus brevis [LVYG]
18144
18070
-
Arg
CCG
[ENA]
¡û
>W131006798
AHKL01000037
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
17033
16959
-
Arg
CCG
[ENA]
¡û
>W131086461
AOBR01000006
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
13145
13071
-
Arg
CCG
[ENA]
¡û
>W1711799991
MXAR01000014
Bacillota
Brevibacillus brevis [MXAR]
100937
101011
+
Arg
CCG
[ENA]
¡û
>W141026783
AKYF01000021
Bacillota
Brevibacillus brevis X23 [AKYF]
16411
16337
-
Arg
CCG
[ENA]
¡û
>W141093538
AVBJ01000061
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
33376
33450
+
Arg
CCG
[ENA]
¡û
>W141185444
AYJU01000003
Bacillota
Brevibacillus panacihumi W25 [AYJU]
292924
292850
-
Arg
CCG
[ENA]
¡û
>W141291642
JATL01000142
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
13568
13494
-
Arg
CCG
[ENA]
¡û
>WENV170583838
FUFK010167418
[FUFK] metagenome; unknown
327
253
-
Arg
CCG
[ENA]
¢þ
>C181030592
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
4814749
4814823
+
Arg
CCG
-
¡û
>C181082068
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
5933548
5933622
+
Arg
CCG
-
¡û
>C181188458
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
5721635
5721709
+
Arg
CCG
-
¡û
>C191041937
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
1171443
1171369
-
Arg
CCG
-
¡û
>C191207647
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
443520
443446
-
Arg
CCG
-
¡û
>C09101475
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
5556148
5556222
+
Arg
CCG
[Ensembl]
¡û
>W1910181739
BJMH01000013
Bacillota
Brevibacillus parabrevis NBRC 12334 [BJMH]
13090
13016
-
Arg
CCG
[ENA]
¡û
>W1910183499
BJNU01000004
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
18137
18063
-
Arg
CCG
[ENA]
¡û
>W1910183910
BJOD01000050
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
13038
12964
-
Arg
CCG
[ENA]
¡û
>W1910183956
BJOE01000036
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
16918
16844
-
Arg
CCG
[ENA]
¡û
>W1910184259
BJOL01000020
Bacillota
Brevibacillus formosus NBRC 15716 [BJOL]
166222
166296
+
Arg
CCG
[ENA]
¡û
>W1910184340
BJON01000033
Bacillota
Brevibacillus reuszeri NBRC 15719 [BJON]
14820
14746
-
Arg
CCG
[ENA]
¡û
>W1810001204
BEXF01000024
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
79834
79908
+
Arg
CCG
[ENA]
¡û
>W1810389891
PXXZ01000030
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
48268
48342
+
Arg
CCG
[ENA]
¡û
>W1810391311
PXZL01000036
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
19023
18949
-
Arg
CCG
[ENA]
¡û
>W1810391421
PXZM01000038
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
104802
104876
+
Arg
CCG
[ENA]
¡û
>W1810391548
PXZN01000021
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
17518
17444
-
Arg
CCG
[ENA]
¡û
>W1810391647
PXZO01000055
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
16301
16227
-
Arg
CCG
[ENA]
¡û
>W1810787399
QRDR01000009
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
18595
18521
-
Arg
CCG
[ENA]
¡û
>W1511629664
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
205921
205995
+
Arg
CCG
[ENA]
¡û
>W1511645843
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
5169666
5169740
+
Arg
CCG
[ENA]
¡û
>W1511699600
LGIQ01000011
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
1054675
1054749
+
Arg
CCG
[ENA]
¡û
>W1511700097
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
5364714
5364640
-
Arg
CCG
[ENA]
¡û
>W121085003
AKIX01000032
Bacillota
Brevibacillus sp. BC25 [AKIX]
19212
19138
-
Arg
CCG
[ENA]
¡û
>W121086591
AKKB01000080
Bacillota
Brevibacillus sp. CF112 [AKKB]
13122
13048
-
Arg
CCG
[ENA]
¡û
>W1610650490
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1220047
1220121
+
Arg
CCG
[ENA]
¡û
>W1610739125
LMPN01000030
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
17205
17131
-
Arg
CCG
[ENA]
¡û
>W1610858206
LQQV01000081
Bacillota
Brevibacillus parabrevis [LQQV]
41951
42025
+
Arg
CCG
[ENA]
¡û
>W1610978480
LVYG01000034
Bacillota
Brevibacillus brevis [LVYG]
18144
18070
-
Arg
CCG
[ENA]
¡û
>W1710081146
BDFB01000014
Bacillota
Brevibacillus brevis [BDFB]
16316
16242
-
Arg
CCG
[ENA]
¡û
>W1710566182
FORT01000019
Bacillota
Brevibacillus centrosporus OK042 [FORT]
89856
89930
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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