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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659669 (45 seq.)
>W1711004505
LQIU01000056
Actinomycetota
Mycobacterium sp. IS-1496 [LQIU]
136574
136648
+
Val
CAC
[ENA]
¡û
>W1711004528
LQIV01000006
Actinomycetota
Mycobacterium sp. IS-1742 [LQIV]
2054
2128
+
Val
CAC
[ENA]
¡û
>W1711006908
LQOS01000029
Actinomycetota
Mycolicibacterium doricum [LQOS]
79595
79521
-
Val
CAC
[ENA]
¡û
>W1711007382
LQPC01000047
Actinomycetota
Mycolicibacterium iranicum [LQPC]
277128
277202
+
Val
CAC
[ENA]
¡û
>W1711276437
LZID01000025
Actinomycetota
Mycolicibacterium monacense 852002-10379_SCH5584320 [LZID]
68417
68343
-
Val
CAC
[ENA]
¡û
>W1711286040
LZST01000075
Actinomycetota
Mycolicibacterium monacense 852013-50142_SCH4511227 [LZST]
69221
69295
+
Val
CAC
[ENA]
¡û
>W1711772857
MVHS01000049
Actinomycetota
Mycolicibacterium insubricum [MVHS]
7878
7952
+
Val
CAC
[ENA]
¡û
>W1711773197
MVIA01000002
Actinomycetota
Mycolicibacterium monacense DSM 44395 [MVIA]
45382
45308
-
Val
CAC
[ENA]
¡û
>W131112011
APMY01000079
Actinomycetota
Rhodococcus rhodnii LMG 5362 [APMY]
45853
45925
+
Val
CAC
[ENA]
¡û
>C013531
CP000656
Actinomycetota
Mycolicibacterium gilvum PYR-GCK [CP000656]
4154795
4154724
-
Val
CAC
[Ensembl]
¡û
>C014544
CP000580
Actinomycetota
Mycobacterium sp. JLS [CP000580]
2370192
2370266
+
Val
CAC
[Ensembl]
¡û
>C014591
CP000518
Actinomycetota
Mycobacterium sp. KMS [CP000518]
2386290
2386364
+
Val
CAC
[Ensembl]
¡û
>C014638
CP000384
Betaproteobacteria
Mycobacterium sp. MCS [CP000384]
2367306
2367380
+
Val
CAC
[Ensembl]
¡û
>W141037965
ALQA01000093
Actinomycetota
Mycolicibacterium vaccae ATCC 25954 [ALQA]
1876
1950
+
Val
CAC
[ENA]
¡û
>W141090116
AUWT01000079
Actinomycetota
Mycolicibacterium iranicum UM_TJL [AUWT]
10612
10686
+
Val
CAC
[ENA]
¡û
>WENV170649997
JRYD01003034
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
1855
1781
-
Val
CAC
[ENA]
¢þ
>WENV170650762
JRYE01016775
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
505
433
-
Val
CAC
[ENA]
¢þ
>WENV170653314
JRYI01064751
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
326
252
-
Val
CAC
[ENA]
¢þ
>W09105264
AAPA01000007
Actinomycetota
Mycolicibacterium gilvum PYR-GCK [AAPA]
23697
23769
+
Val
CAC
[ENA]
¡û
>W09105528
AAPW01000004
Actinomycetota
Mycobacterium sp. MCS [AAPW]
96042
95968
-
Val
CAC
[ENA]
¡û
>W09105633
AAQC01000010
Actinomycetota
Mycobacterium sp. JLS [AAQC]
90747
90821
+
Val
CAC
[ENA]
¡û
>W09105669
AAQD01000009
Actinomycetota
Mycobacterium sp. KMS [AAQD]
171341
171415
+
Val
CAC
[ENA]
¡û
>C191208570
LR134356
Actinomycetota
Mycolicibacterium aurum NCTC10437 [LR134356]
2430860
2430934
+
Val
CAC
-
¡û
>W1910002600
ATDQ01000035
Actinomycetota
Mycolicibacterium brumae DSM 44177 [ATDQ]
115367
115441
+
Val
CAC
[ENA]
¡û
>W1911385662
NVQD01000001
Actinomycetota
Mycobacterium sp. PYR10 [NVQD]
983195
983267
+
Val
CAC
[ENA]
¡û
>W1810052596
PDCN02000006
Actinomycetota
Mycolicibacterium brumae CIP1034565 [PDCN]
73962
74036
+
Val
CAC
[ENA]
¡û
>W1810338870
PUTW01019408
Actinomycetota
Mycobacterium sp. ITM-2016-00317 [PUTW]
1454
1528
+
Val
CAC
[ENA]
¡û
>W1810659095
QJJU01000005
Actinomycetota
Mycolicibacterium moriokaense GAS496 [QJJU]
470
544
+
Val
CAC
[ENA]
¡û
>W1810673380
QJUA01000005
Actinomycetota
Mycobacterium kyogaense NCTC 11659 [QJUA]
30387
30461
+
Val
CAC
[ENA]
¡û
>W1510649865
CVQQ01000026
Actinomycetota
Mycolicibacterium aurum NCTC 10437 [CVQQ]
52270
52344
+
Val
CAC
[ENA]
¡û
>C11115514
CP002385
Actinomycetota
Mycolicibacterium gilvum Spyr1 [CP002385]
3369709
3369637
-
Val
CAC
[Ensembl]
¡û
>W1511534271
JYNU01000012
Actinomycetota
Mycolicibacterium obuense DSM 44075 [JYNU]
39185
39259
+
Val
CAC
[ENA]
¡û
>W1511584024
LAUZ02000035
Actinomycetota
Mycolicibacterium obuense UC1 [LAUZ]
22649
22575
-
Val
CAC
[ENA]
¡û
>C121004694
CP003053
Actinomycetota
Mycolicibacterium chubuense NBB4 [CP003053]
2272437
2272511
+
Val
CAC
[Ensembl]
¡û
>C161036270
CP011491
Actinomycetota
Mycolicibacterium vaccae 95051 [CP011491]
2476926
2477000
+
Val
CAC
-
¡û
>W1610068972
BCRS01000132
Actinomycetota
Mycolicibacterium vaccae NBRC 14118 = CIP 105934 [BCRS]
1579
1653
+
Val
CAC
[ENA]
¡û
>W1610435307
FJNX01000001
Actinomycetota
Mycolicibacterium brumae [FJNX]
90959
90885
-
Val
CAC
[ENA]
¡û
>W1610855099
LQIU01000056
Actinomycetota
Mycobacterium sp. IS-1496 [LQIU]
136574
136648
+
Val
CAC
[ENA]
¡û
>W1610855122
LQIV01000006
Actinomycetota
Mycobacterium sp. IS-1742 [LQIV]
2054
2128
+
Val
CAC
[ENA]
¡û
>W1611035722
LZID01000025
Actinomycetota
Mycolicibacterium monacense 852002-10379_SCH5584320 [LZID]
68417
68343
-
Val
CAC
[ENA]
¡û
>W1611043601
LZST01000075
Actinomycetota
Mycolicibacterium monacense 852013-50142_SCH4511227 [LZST]
69221
69295
+
Val
CAC
[ENA]
¡û
>W1710066345
BCRS01000132
Actinomycetota
Mycolicibacterium vaccae NBRC 14118 = CIP 105934 [BCRS]
1579
1653
+
Val
CAC
[ENA]
¡û
>W1710072129
BCXD01000003
Actinomycetota
Rhodococcus rhodnii NBRC 100604 [BCXD]
335263
335191
-
Val
CAC
[ENA]
¡û
>W1710435043
FJNX01000001
Actinomycetota
Mycolicibacterium brumae [FJNX]
90959
90885
-
Val
CAC
[ENA]
¡û
>W1710619790
JMHQ01000119
Actinomycetota
Mycobacterium sp. SWH-M1 [JMHQ]
8492
8566
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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