This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659718 (98 seq.)
>W1710793507
LJPL01000001
Bacillota
Streptococcus pasteurianus [LJPL]
591988
591917
-
Arg
CCG
[ENA]
¡û
>W1710989107
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1721223
1721294
+
Arg
CCG
[ENA]
¡û
>W1710989199
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
75105
75034
-
Arg
CCG
[ENA]
¡û
>W1711019336
LQXV01000362
Bacillota
Streptococcus gallolyticus [LQXV]
1502
1573
+
Arg
CCG
[ENA]
¡û
>W1711080508
LSRA01000062
Bacillota
Streptococcus pasteurianus [LSRA]
39396
39325
-
Arg
CCG
[ENA]
¡û
>W1711207039
LXFC01000010
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
16158
16229
+
Arg
CCG
[ENA]
¡û
>W1711305558
MAMV01000001
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [MAMV]
16158
16229
+
Arg
CCG
[ENA]
¡û
>C171084871
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
1064810
1064881
+
Arg
CCG
-
¡û
>WENV180116399
OAQU01000242
[OAQU] human gut metagenome; ENVO:feces
10337
10266
-
Arg
CCG
[ENA]
¢þ
>WENV180116403
OAQU01000272
[OAQU] human gut metagenome; ENVO:feces
9036
8965
-
Arg
CCG
[ENA]
¢þ
>WENV180116453
OAQV01000013
[OAQV] human gut metagenome; ENVO:feces
66609
66538
-
Arg
CCG
[ENA]
¢þ
>WENV180116710
OAQX01000150
[OAQX] human gut metagenome; ENVO:feces
7857
7928
+
Arg
CCG
[ENA]
¢þ
>WENV180400587
OBRI01009713
[OBRI] human gut metagenome; ENVO:feces
280
209
-
Arg
CCG
[ENA]
¢þ
>WENV180401638
OBRM01002668
[OBRM] human gut metagenome; ENVO:feces
73
2
-
Arg
CCG
[ENA]
¢þ
>WENV180415596
OBVF01000014
[OBVF] human gut metagenome; faeces
170606
170677
+
Arg
CCG
[ENA]
¢þ
>WENV181338291
OFMF01001430
[OFMF] human gut metagenome; human gut
18356
18427
+
Arg
CCG
[ENA]
¢þ
>WENV181555153
OGIT01000048
[OGIT] metagenome; Human gut stool
1469
1540
+
Arg
CCG
[ENA]
¢þ
>WENV181557802
OGIW01000183
[OGIW] metagenome; Human gut stool
1469
1540
+
Arg
CCG
[ENA]
¢þ
>WENV181563531
OGJH01000020
[OGJH] metagenome; Human gut stool
150675
150604
-
Arg
CCG
[ENA]
¢þ
>WENV181652484
OGNW01029507
[OGNW] metagenome; Human gut stool
532
461
-
Arg
CCG
[ENA]
¢þ
>WENV181879280
OGXF01000112
[OGXF] human gut metagenome; faeces
45539
45610
+
Arg
CCG
[ENA]
¢þ
>WENV181889991
OGXN01002819
[OGXN] human gut metagenome; faeces
9779
9708
-
Arg
CCG
[ENA]
¢þ
>WENV181964944
OGZS01000049
[OGZS] human gut metagenome; faeces
104245
104174
-
Arg
CCG
[ENA]
¢þ
>WENV182099425
OHHR01001324
[OHHR] human gut metagenome; feces
1438
1509
+
Arg
CCG
[ENA]
¢þ
>WENV182140683
OHKR01001069
[OHKR] human gut metagenome; feces
788
717
-
Arg
CCG
[ENA]
¢þ
>WENV182149133
OHLG01000222
[OHLG] human gut metagenome; feces
4924
4853
-
Arg
CCG
[ENA]
¢þ
>WENV182164430
OHMN01000282
[OHMN] human gut metagenome; faeces
49888
49817
-
Arg
CCG
[ENA]
¢þ
>WENV182185668
OHOG01000571
[OHOG] human gut metagenome; feces
1147
1218
+
Arg
CCG
[ENA]
¢þ
>WENV182194428
OHPC01001570
[OHPC] human gut metagenome; feces
340
411
+
Arg
CCG
[ENA]
¢þ
>WENV182230085
OHRK01000167
[OHRK] human gut metagenome; feces
3258
3329
+
Arg
CCG
[ENA]
¢þ
>WENV182275545
OHUN01001297
[OHUN] human gut metagenome; feces
9762
9691
-
Arg
CCG
[ENA]
¢þ
>WENV182394773
OIEJ01001063
[OIEJ] human gut metagenome; human gut
271
200
-
Arg
CCG
[ENA]
¢þ
>WENV182409739
OIFJ01000163
[OIFJ] human gut metagenome; stool
38284
38355
+
Arg
CCG
[ENA]
¢þ
>WENV182413190
OIFX01000157
[OIFX] human gut metagenome; stool
15896
15967
+
Arg
CCG
[ENA]
¢þ
>WENV182811267
OJXK01000017
[OJXK] human gut metagenome; human gut
15866
15937
+
Arg
CCG
[ENA]
¢þ
>WENV182814519
OJYK01000271
[OJYK] human gut metagenome; human gut
15874
15945
+
Arg
CCG
[ENA]
¢þ
>WENV182820239
OKAL01000059
[OKAL] human gut metagenome; human gut
16010
16081
+
Arg
CCG
[ENA]
¢þ
>WENV182842414
OKIE01000088
[OKIE] human gut metagenome; human gut
16010
16081
+
Arg
CCG
[ENA]
¢þ
>WENV182848202
OKKG01000050
[OKKG] human gut metagenome; human gut
39417
39346
-
Arg
CCG
[ENA]
¢þ
>WENV182854653
OKMW01000074
[OKMW] human gut metagenome; human gut
15874
15945
+
Arg
CCG
[ENA]
¢þ
>WENV182856239
OKNJ01000018
[OKNJ] human gut metagenome; human gut
39417
39346
-
Arg
CCG
[ENA]
¢þ
>WENV182861985
OKPJ01000038
[OKPJ] human gut metagenome; human gut
15874
15945
+
Arg
CCG
[ENA]
¢þ
>WENV182901392
OKSV01001362
[OKSV] human gut metagenome; feces
1449
1520
+
Arg
CCG
[ENA]
¢þ
>WENV182951082
OKVT01002291
[OKVT] human gut metagenome; human gut
91
20
-
Arg
CCG
[ENA]
¢þ
>WENV182958976
OKWI01000104
[OKWI] human gut metagenome; stool
16025
15954
-
Arg
CCG
[ENA]
¢þ
>WENV182961714
OKWL01000190
[OKWL] human gut metagenome; stool
16025
15954
-
Arg
CCG
[ENA]
¢þ
>WENV182962294
OKWN01000165
[OKWN] human gut metagenome; stool
16025
15954
-
Arg
CCG
[ENA]
¢þ
>WENV182965736
OKWT01000087
[OKWT] human gut metagenome; stool
38284
38355
+
Arg
CCG
[ENA]
¢þ
>WENV183334069
OLWE01052358
[OLWE] human gut metagenome; feces
438
509
+
Arg
CCG
[ENA]
¢þ
>WENV183602648
OODK01000057
[OODK] human gut metagenome; human gut
15883
15954
+
Arg
CCG
[ENA]
¢þ
>WENV183605849
OODN01000061
[OODN] human gut metagenome; human gut
1005
1076
+
Arg
CCG
[ENA]
¢þ
>WENV183609175
OODQ01002178
[OODQ] human gut metagenome; human gut
2969
3040
+
Arg
CCG
[ENA]
¢þ
>WENV183780930
PPYF01188320
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1579
1650
+
Arg
CCG
[ENA]
¢þ
>C181211618
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
1065427
1065498
+
Arg
CCG
-
¡û
>C181214997
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
962550
962621
+
Arg
CCG
-
¡û
>C191166413
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
927296
927367
+
Arg
CCG
-
¡û
>C191199829
LR134203
Bacillota
Streptococcus lutetiensis NCTC11436 [LR134203]
990920
990991
+
Arg
CCG
-
¡û
>W141727318
JNCV01000027
Bacillota
Streptococcus macedonicus [JNCV]
56529
56600
+
Arg
CCG
[ENA]
¡û
>C141001334
CP003025
Bacillota
Streptococcus lutetiensis 033 [CP003025]
768951
769022
+
Arg
CCG
[Ensembl]
¡û
>W1910889493
NETH01000007
Bacillota
Streptococcus gallolyticus BI02 [NETH]
3756
3685
-
Arg
CCG
[ENA]
¡û
>W1810069556
PEBL01000006
Bacillota
Streptococcus macedonicus 211MA [PEBL]
543
614
+
Arg
CCG
[ENA]
¡û
>W1810069609
PEBM01000046
Bacillota
Streptococcus macedonicus 27MV [PEBM]
15388
15459
+
Arg
CCG
[ENA]
¡û
>W1810069646
PEBN01000017
Bacillota
Streptococcus macedonicus 19AS [PEBN]
19348
19419
+
Arg
CCG
[ENA]
¡û
>W1810188052
PKIB01000001
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
421338
421409
+
Arg
CCG
[ENA]
¡û
>W1810904643
QVEM01000010
Bacillota
Streptococcus pasteurianus AM21-19 [QVEM]
92868
92797
-
Arg
CCG
[ENA]
¡û
>W1810905288
QVEY01000023
Bacillota
Streptococcus pasteurianus AF13-35 [QVEY]
1647
1576
-
Arg
CCG
[ENA]
¡û
>W1810907426
QVHT01000001
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
769091
769020
-
Arg
CCG
[ENA]
¡û
>W1810907648
QVHX01000013
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
15866
15937
+
Arg
CCG
[ENA]
¡û
>W1510069671
CDEY01000025
Bacillota
Streptococcus pasteurianus HC-2909-2 [CDEY]
15915
15986
+
Arg
CCG
[ENA]
¡û
>W10127562
AEEL01000014
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
16031
16102
+
Arg
CCG
[ENA]
¡û
>W10127592
AEEM01000013
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
16040
16111
+
Arg
CCG
[ENA]
¡û
>C10111594
FN597254
Bacillota
Streptococcus gallolyticus UCN34 [FN597254]
1034193
1034264
+
Arg
CCG
[Ensembl]
¡û
>C11120596
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
1006487
1006558
+
Arg
CCG
[Ensembl]
¡û
>C11121187
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
885827
885898
+
Arg
CCG
[Ensembl]
¡û
>W1511447391
JUYN01000024
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
1458
1529
+
Arg
CCG
[ENA]
¡û
>W11135050
AEEL01000014
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
16031
16102
+
Arg
CCG
[ENA]
¡û
>W11135080
AEEM01000013
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
16040
16111
+
Arg
CCG
[ENA]
¡û
>W1511530615
JYKU01000010
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
16317
16388
+
Arg
CCG
[ENA]
¡û
>C121017496
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
1003000
1003071
+
Arg
CCG
[Ensembl]
¡û
>C121018011
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
884793
884864
+
Arg
CCG
[Ensembl]
¡û
>C161059330
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
1044668
1044597
-
Arg
CCG
[Ensembl]
¡û
>C161059393
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
730122
730193
+
Arg
CCG
[Ensembl]
¡û
>W1610514157
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
773621
773692
+
Arg
CCG
[ENA]
¡û
>W1610843983
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1721223
1721294
+
Arg
CCG
[ENA]
¡û
>W1610844075
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
75105
75034
-
Arg
CCG
[ENA]
¡û
>W1610867624
LQXV01000362
Bacillota
Streptococcus gallolyticus [LQXV]
1502
1573
+
Arg
CCG
[ENA]
¡û
>W1610919375
LSRA01000062
Bacillota
Streptococcus pasteurianus [LSRA]
39396
39325
-
Arg
CCG
[ENA]
¡û
>W1610995069
LXFC01000010
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
16158
16229
+
Arg
CCG
[ENA]
¡û
>W1710520140
FNFJ01000001
Bacillota
Streptococcus gallolyticus [FNFJ]
457029
457100
+
Arg
CCG
[ENA]
¡û
>W1710521612
FNGN01000001
Bacillota
Streptococcus gallolyticus [FNGN]
457954
458025
+
Arg
CCG
[ENA]
¡û
>W1710525269
FNJK01000002
Bacillota
Streptococcus equinus [FNJK]
375703
375774
+
Arg
CCG
[ENA]
¡û
>W1710525996
FNJY01000001
Bacillota
Streptococcus equinus [FNJY]
328157
328228
+
Arg
CCG
[ENA]
¡û
>W1710538090
FNUH01000002
Bacillota
Streptococcus gallolyticus [FNUH]
274018
274089
+
Arg
CCG
[ENA]
¡û
>W1710545436
FOBM01000001
Bacillota
Streptococcus gallolyticus [FOBM]
411636
411565
-
Arg
CCG
[ENA]
¡û
>W1710551945
FOGM01000003
Bacillota
Streptococcus gallolyticus [FOGM]
175156
175085
-
Arg
CCG
[ENA]
¡û
>W1710558544
FOLZ01000001
Bacillota
Streptococcus gallolyticus [FOLZ]
551383
551454
+
Arg
CCG
[ENA]
¡û
>W1710575257
FOZA01000001
Bacillota
Streptococcus equinus [FOZA]
398060
397989
-
Arg
CCG
[ENA]
¡û
>W1710578344
FPBN01000001
Bacillota
Streptococcus gallolyticus [FPBN]
551383
551454
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK