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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659723 (46 seq.)
>W1710877328
LMQA01000001
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
148687
148759
+
Gly
GCC
[ENA]
¡û
>W1711430451
MIJB01000018
Actinomycetota
Aeromicrobium sp. PE09-221 [MIJB]
27402
27330
-
Gly
GCC
[ENA]
¡û
>W131230341
AUHN01000008
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
288587
288515
-
Gly
GCC
[ENA]
¡û
>W131230344
AUHN01000008
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
286545
286473
-
Gly
GCC
[ENA]
¡û
>WENV180028523
FTJE01001087
[FTJE] metagenome; soil
1051
1125
+
Gly
GCC
[ENA]
¢þ
>WENV180028807
FTJH01001184
[FTJH] metagenome; soil
1380
1306
-
Gly
GCC
[ENA]
¢þ
>WENV180357720
OBNN01077253
[OBNN] marine metagenome; Coastal water
293
367
+
Gly
GCC
[ENA]
¢þ
>WENV181377510
OFRA01013724
[OFRA] wastewater metagenome; Lake Maggiore Verbania
444
370
-
Gly
GCC
[ENA]
¢þ
>WENV181400769
OFSF01022925
[OFSF] wastewater metagenome; Exp Tend VB 100WW
682
756
+
Gly
GCC
[ENA]
¢þ
>W141259277
CBYP010000006
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
21280
21352
+
Gly
GCC
[ENA]
¡û
>WENV170552483
CXWK01000149
[CXWK] wastewater metagenome; activated sludge
1086
1012
-
Gly
GCC
[ENA]
¢þ
>WENV170601513
FUWD010177601
[FUWD] metagenome; unknown
478
406
-
Gly
GCC
[ENA]
¢þ
>WENV170604326
FUWD010386609
[FUWD] metagenome; unknown
277
351
+
Gly
GCC
[ENA]
¢þ
>WENV170645580
JNSL01000002
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14041
14115
+
Gly
GCC
[ENA]
¢þ
>C181055894
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
2397142
2397214
+
Gly
GCC
-
¡û
>C181055897
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
2401170
2401244
+
Gly
GCC
-
¡û
>C181212473
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
1480373
1480301
-
Gly
GCC
-
¡û
>C181212476
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
1476345
1476271
-
Gly
GCC
-
¡û
>W09109170
ABUA01000013
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
14690
14762
+
Gly
GCC
[ENA]
¡û
>W09109173
ABUA01000013
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
18718
18792
+
Gly
GCC
[ENA]
¡û
>W141730431
JNII01000008
Actinomycetota
Geodermatophilaceae bacterium URHB0048 [JNII]
170820
170892
+
Gly
GCC
[ENA]
¡û
>W141731276
JNIY01000006
Actinomycetota
Paraoerskovia marina DSM 21750 [JNIY]
15558
15630
+
Gly
GCC
[ENA]
¡û
>W141819752
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
4642892
4642966
+
Gly
GCC
[ENA]
¡û
>W141819788
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
8247736
8247664
-
Gly
GCC
[ENA]
¡û
>W1911495751
OBQI01000005
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
170405
170477
+
Gly
GCC
[ENA]
¡û
>W1911497465
OCNK01000006
Actinomycetota
Blastococcus haudaquaticus DSM 44270 [OCNK]
14858
14786
-
Gly
GCC
[ENA]
¡û
>W1911502869
OEQC01000001
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
623368
623296
-
Gly
GCC
[ENA]
¡û
>W1911502872
OEQC01000001
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
622909
622837
-
Gly
GCC
[ENA]
¡û
>W1810090083
PGFE01000002
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
449760
449688
-
Gly
GCC
[ENA]
¡û
>W1810222150
POQT01000010
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
29772
29700
-
Gly
GCC
[ENA]
¡û
>W1810222211
POQU01000067
Actinomycetota
Blastococcus atacamensis P6 [POQU]
13617
13689
+
Gly
GCC
[ENA]
¡û
>W1810679030
QKNV01000267
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
4176
4104
-
Gly
GCC
[ENA]
¡û
>W1810733464
QOHH01000003
Actinomycetota
Blastococcus sp. TF02-9 [QOHH]
135063
135135
+
Gly
GCC
[ENA]
¡û
>W1810733542
QOHI01000005
Actinomycetota
Blastococcus sp. TBT05-19 [QOHI]
203854
203782
-
Gly
GCC
[ENA]
¡û
>W1510013945
BBPL01000007
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
4247
4175
-
Gly
GCC
[ENA]
¡û
>W1510013970
BBPL01000021
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
93367
93293
-
Gly
GCC
[ENA]
¡û
>C10107930
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
1480531
1480459
-
Gly
GCC
[Ensembl]
¡û
>C10107933
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
1476503
1476429
-
Gly
GCC
[Ensembl]
¡û
>W1610739674
LMQA01000001
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
148687
148759
+
Gly
GCC
[ENA]
¡û
>W1710514330
FNAW01000003
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
605991
605919
-
Gly
GCC
[ENA]
¡û
>W1710515385
FNBT01000007
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
64769
64697
-
Gly
GCC
[ENA]
¡û
>W1710515965
FNCF01000004
Actinomycetota
Klenkia brasiliensis [FNCF]
534532
534460
-
Gly
GCC
[ENA]
¡û
>W1710524375
FNIR01000007
Actinomycetota
Klenkia soli [FNIR]
116056
116128
+
Gly
GCC
[ENA]
¡û
>W1710558775
FOMD01000004
Actinomycetota
Klenkia taihuensis [FOMD]
479971
479899
-
Gly
GCC
[ENA]
¡û
>W1710561214
FONZ01000002
Actinomycetota
Flavimobilis marinus [FONZ]
377746
377818
+
Gly
GCC
[ENA]
¡û
>W1710561217
FONZ01000002
Actinomycetota
Flavimobilis marinus [FONZ]
381315
381387
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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