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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659813 (45 seq.)
>W1711317785
MAXS01000089
Thermodesulfobacteriota
Desulfuromonadales bacterium C00003093 [MAXS]
7349
7423
+
Val
GAC
[ENA]
¡û
>W1711411816
MGTO01000136
Thermodesulfobacteriota
Desulfuromonadales bacterium GWC2_61_20 [MGTO]
16987
16913
-
Val
GAC
[ENA]
¡û
>W1711411900
MGTQ01000155
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_61_12 [MGTQ]
5443
5369
-
Val
GAC
[ENA]
¡û
>W1711420787
MHXM01000041
Thermodesulfobacteriota
Desulfuromonadaceae bacterium GWC2_58_13 [MHXM]
12214
12140
-
Val
GAC
[ENA]
¡û
>W1711420805
MHXM01000145
Thermodesulfobacteriota
Desulfuromonadaceae bacterium GWC2_58_13 [MHXM]
3402
3476
+
Val
GAC
[ENA]
¡û
>W1711921563
NAAD01000001
Thermodesulfobacteriota
Geothermobacter hydrogeniphilus EPR-M [NAAD]
332157
332231
+
Val
GAC
[ENA]
¡û
>C171038980
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
1291671
1291745
+
Val
GAC
-
¡û
>C171039142
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
534462
534536
+
Val
GAC
-
¡û
>C015922
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
1666100
1666174
+
Val
GAC
[Ensembl]
¡û
>WENV180042683
LQAG01000074
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
23993
24067
+
Val
GAC
[ENA]
¢þ
>WENV180042943
LQAH01000013
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
39397
39323
-
Val
GAC
[ENA]
¢þ
>WENV180296356
OBJA01000326
[OBJA] soil metagenome; sediment, water from around vicinity
43607
43533
-
Val
GAC
[ENA]
¢þ
>WENV180345466
OBLN01000227
[OBLN] sediment metagenome; sediment
20545
20619
+
Val
GAC
[ENA]
¢þ
>WENV180345643
OBLN01001518
[OBLN] sediment metagenome; sediment
6669
6595
-
Val
GAC
[ENA]
¢þ
>WENV180345769
OBLN01004821
[OBLN] sediment metagenome; sediment
3623
3697
+
Val
GAC
[ENA]
¢þ
>W141076070
ATBO01000030
Thermodesulfobacteriota
Desulfuromonas sp. TF [ATBO]
49854
49780
-
Val
GAC
[ENA]
¡û
>WENV181286039
OFGU01028129
[OFGU] soil metagenome; Clay
144
218
+
Val
GAC
[ENA]
¢þ
>WENV181293554
OFHG01007727
[OFHG] soil metagenome; Clay
1255
1329
+
Val
GAC
[ENA]
¢þ
>WENV181297050
OFHK01006636
[OFHK] soil metagenome; Clay
2356
2430
+
Val
GAC
[ENA]
¢þ
>WENV183514854
OMKS01034605
[OMKS] sediment metagenome; hot spring sediment
1401
1327
-
Val
GAC
[ENA]
¢þ
>WENV183515820
OMKS01096269
[OMKS] sediment metagenome; hot spring sediment
188
262
+
Val
GAC
[ENA]
¢þ
>WENV183706630
PDWI01004891
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4734
4805
+
Val
GAC
[ENA]
¢þ
>WENV183717290
PDWJ01000695
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
68148
68219
+
Val
GAC
[ENA]
¢þ
>WENV170007583
AMWB02142326
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
12402
12328
-
Val
GAC
[ENA]
¢þ
>WENV170175267
CEOQ01504777
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1314
1240
-
Val
GAC
[ENA]
¢þ
>WENV170635189
JDSF01000201
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
12186
12112
-
Val
GAC
[ENA]
¢þ
>WENV170635222
JDSF01000318
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
6409
6483
+
Val
GAC
[ENA]
¢þ
>WENV170657600
JTFP01004625
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1895
1821
-
Val
GAC
[ENA]
¢þ
>WENV170657811
JTFP01021893
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
790
864
+
Val
GAC
[ENA]
¢þ
>WENV170660376
JXWT01087023
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
327
253
-
Val
GAC
[ENA]
¢þ
>WENV170661340
JXWV01010297
[JXWV] soil metagenome; rice field; organic FYM Plot
146
220
+
Val
GAC
[ENA]
¢þ
>WENV170694164
LGVD01016786
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
7349
7423
+
Val
GAC
[ENA]
¢þ
>WENV170696419
LGVF01016506
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
5906
5980
+
Val
GAC
[ENA]
¢þ
>WENV170909982
MDTE01085607
[MDTE] marine metagenome; seawater
8118
8192
+
Val
GAC
[ENA]
¢þ
>WENV170937859
MDTG01299144
[MDTG] marine metagenome; seawater
5628
5554
-
Val
GAC
[ENA]
¢þ
>W141776744
JOMG01000002
Thermodesulfobacteriota
Pelobacter seleniigenes DSM 18267 [JOMG]
1057367
1057293
-
Val
GAC
[ENA]
¡û
>W141776762
JOMG01000004
Thermodesulfobacteriota
Pelobacter seleniigenes DSM 18267 [JOMG]
544349
544423
+
Val
GAC
[ENA]
¡û
>W1910230047
FOJJ01000001
Thermodesulfobacteriota
Desulfuromonas acetexigens [FOJJ]
263920
263994
+
Val
GAC
[ENA]
¡û
>W1910230097
FOJJ01000040
Thermodesulfobacteriota
Desulfuromonas acetexigens [FOJJ]
36027
35953
-
Val
GAC
[ENA]
¡û
>W1810235945
PPFX01000028
Thermodesulfobacteriota
Geothermobacter hydrogeniphilus HR-1 [PPFX]
30010
29936
-
Val
GAC
[ENA]
¡û
>C151066489
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
1686143
1686217
+
Val
GAC
[Ensembl]
¡û
>W1511480361
JWJD01000001
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus DSM 17813 [JWJD]
248900
248974
+
Val
GAC
[ENA]
¡û
>C161082921
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
1968046
1968120
+
Val
GAC
[Ensembl]
¡û
>W1710514071
FNAQ01000004
Thermodesulfobacteriota
Desulfuromonas thiophila [FNAQ]
33235
33161
-
Val
GAC
[ENA]
¡û
>W1710521952
FNGU01000004
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus [FNGU]
138801
138727
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK