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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659854 (41 seq.)
>W1711179124
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
74252
74324
+
Thr
GGT
[ENA]
¡û
>C171057636
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3285508
3285582
+
Thr
GGT
-
¡û
>W131145921
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1856458
1856532
+
Thr
GGT
[ENA]
¡û
>w027802
ABCM01000011
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
195743
195667
-
Thr
GGT
[ENA]
¡û
>W141027916
AKZJ01000001
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
495955
496027
+
Thr
GGT
[ENA]
¡û
>W141142879
AWRU01000032
Bacteroidota
Pedobacter sp. V48 [AWRU]
34677
34603
-
Thr
GGT
[ENA]
¡û
>WENV183738125
PJUD01087418
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
169
241
+
Thr
GGT
[ENA]
¢þ
>WENV183741160
PJUF01048528
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
90
18
-
Thr
GGT
[ENA]
¢þ
>WENV183743475
PJUJ01001844
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
449
377
-
Thr
GGT
[ENA]
¢þ
>WENV183745287
PJUL01015668
[PJUL] feces metagenome; Chicken feces enriched on filter paper
297
225
-
Thr
GGT
[ENA]
¢þ
>WENV170010549
APMI01020157
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6815
6741
-
Thr
GGT
[ENA]
¢þ
>C181094359
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
5220141
5220213
+
Thr
GGT
-
¡û
>W09109593
ABUJ01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
178833
178907
+
Thr
GGT
[ENA]
¡û
>C191226455
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
6189315
6189243
-
Thr
GGT
-
¡û
>W1910664184
MBTA01000009
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
10004
10076
+
Thr
GGT
[ENA]
¡û
>C09108541
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
993249
993323
+
Thr
GGT
[Ensembl]
¡û
>W1911496559
OCMT01000002
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
1101942
1101870
-
Thr
GGT
[ENA]
¡û
>W1911647395
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
252755
252683
-
Thr
GGT
[ENA]
¡û
>W1810405031
PYLS01000006
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
367028
366956
-
Thr
GGT
[ENA]
¡û
>W1810474640
QAIL01000169
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
541
613
+
Thr
GGT
[ENA]
¡û
>W1810503924
QBKM01000006
Bacteroidota
Pedobacter sp. YR016 [QBKM]
113794
113866
+
Thr
GGT
[ENA]
¡û
>W1810676157
QKLU01000006
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
172351
172423
+
Thr
GGT
[ENA]
¡û
>W1810704223
QMHN01000002
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
472866
472794
-
Thr
GGT
[ENA]
¡û
>W1810704262
QMHO01000003
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
62861
62789
-
Thr
GGT
[ENA]
¡û
>W1810704320
QMHP01000008
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
182135
182207
+
Thr
GGT
[ENA]
¡û
>W1810720078
QNQU01000006
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
192328
192256
-
Thr
GGT
[ENA]
¡û
>W1810761073
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
544728
544800
+
Thr
GGT
[ENA]
¡û
>W1810885506
QUNJ01000004
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
616624
616696
+
Thr
GGT
[ENA]
¡û
>W1511646557
LECU01000003
Bacteroidota
Pedobacter sp. BMA [LECU]
22920
22848
-
Thr
GGT
[ENA]
¡û
>C161049158
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5431802
5431728
-
Thr
GGT
[Ensembl]
¡û
>W121063665
AJLG01000062
Bacteroidota
Pedobacter agri PB92 [AJLG]
10232
10304
+
Thr
GGT
[ENA]
¡û
>W1610612129
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
4075
4149
+
Thr
GGT
[ENA]
¡û
>W1610987076
LWHJ01000011
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
74252
74324
+
Thr
GGT
[ENA]
¡û
>W1710519690
FNEX01000016
Bacteroidota
Pedobacter sp. ok626 [FNEX]
160677
160751
+
Thr
GGT
[ENA]
¡û
>W1710522106
FNGY01000013
Bacteroidota
Pedobacter steynii [FNGY]
9762
9836
+
Thr
GGT
[ENA]
¡û
>W1710551676
FOGG01000011
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
79199
79125
-
Thr
GGT
[ENA]
¡û
>W1710555455
FOJM01000006
Bacteroidota
Pedobacter suwonensis [FOJM]
242024
242098
+
Thr
GGT
[ENA]
¡û
>W1710583252
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
890070
890144
+
Thr
GGT
[ENA]
¡û
>W1710606382
FWXT01000005
Bacteroidota
Pedobacter africanus [FWXT]
127190
127116
-
Thr
GGT
[ENA]
¡û
>W1710606800
FWYB01000011
Bacteroidota
Pedobacter nyackensis [FWYB]
31059
31133
+
Thr
GGT
[ENA]
¡û
>W1710733635
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
4075
4149
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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