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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659855 (54 seq.)
>W1710853392
LLWP01000012
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
182603
182677
+
Arg
CCT
[ENA]
¡û
>W1710870431
LMKM01000036
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
51255
51183
-
Arg
CCT
[ENA]
¡û
>W1710871279
LMLE01000008
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
72165
72093
-
Arg
CCT
[ENA]
¡û
>W1710876330
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
74961
74889
-
Arg
CCT
[ENA]
¡û
>W1710877052
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
92998
92926
-
Arg
CCT
[ENA]
¡û
>W1710888297
LMZQ01000002
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
81222
81150
-
Arg
CCT
[ENA]
¡û
>W1711179143
LWHJ01000030
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
209702
209628
-
Arg
CCT
[ENA]
¡û
>W1712082053
NHOT01000003
Bacteroidota
Pedobacter sp. AJM [NHOT]
1040305
1040233
-
Arg
CCT
[ENA]
¡û
>C171057667
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1195595
1195523
-
Arg
CCT
-
¡û
>C171117345
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
5005101
5005029
-
Arg
CCT
-
¡û
>W141142883
AWRU01000034
Bacteroidota
Pedobacter sp. V48 [AWRU]
182457
182382
-
Arg
CCT
[ENA]
¡û
>W141187581
AYMG01000001
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
205097
205025
-
Arg
CCT
[ENA]
¡û
>W141292018
JAUG01000026
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
48454
48379
-
Arg
CCT
[ENA]
¡û
>WENV183093403
OLMA01000554
[OLMA] soil metagenome; soil
9
81
+
Arg
CCT
[ENA]
¢þ
>W141350087
JCKI01000001
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
243702
243630
-
Arg
CCT
[ENA]
¡û
>WENV183741747
PJUG01005964
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
907
835
-
Arg
CCT
[ENA]
¢þ
>WENV183742524
PJUI01000007
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
501190
501262
+
Arg
CCT
[ENA]
¢þ
>WENV183745158
PJUL01003497
[PJUL] feces metagenome; Chicken feces enriched on filter paper
455
527
+
Arg
CCT
[ENA]
¢þ
>WENV171003210
NNBT01002420
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
14173
14247
+
Arg
CCT
[ENA]
¢þ
>C181094354
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
4551992
4552064
+
Arg
CCT
-
¡û
>W141727609
JNFF01000001
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
8757
8683
-
Arg
CCT
[ENA]
¡û
>W1911647406
QAJL01000004
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
918918
918990
+
Arg
CCT
[ENA]
¡û
>W1810503886
QBKL01000019
Bacteroidota
Pedobacter sp. OK291 [QBKL]
3090
3162
+
Arg
CCT
[ENA]
¡û
>W1810503904
QBKM01000002
Bacteroidota
Pedobacter sp. YR016 [QBKM]
327061
327133
+
Arg
CCT
[ENA]
¡û
>W1810606102
QGNY01000002
Bacteroidota
Pedobacter paludis R-8 [QGNY]
236541
236469
-
Arg
CCT
[ENA]
¡û
>W1810606161
QGNZ01000002
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
855639
855711
+
Arg
CCT
[ENA]
¡û
>W1810693871
QLLR01000003
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
70251
70179
-
Arg
CCT
[ENA]
¡û
>W1810720082
QNQU01000012
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
123308
123236
-
Arg
CCT
[ENA]
¡û
>W1810761066
QPKV01000003
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
34337
34265
-
Arg
CCT
[ENA]
¡û
>W1810885488
QUNJ01000003
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
535192
535264
+
Arg
CCT
[ENA]
¡û
>W1810885606
QUNL01000014
Bacteroidota
Pedobacter sp. OV280 [QUNL]
51285
51357
+
Arg
CCT
[ENA]
¡û
>W1511509428
JXRA01000061
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
24087
24161
+
Arg
CCT
[ENA]
¡û
>C161049147
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
6142286
6142214
-
Arg
CCT
[Ensembl]
¡û
>C161073033
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
4823720
4823648
-
Arg
CCT
[Ensembl]
¡û
>W121063677
AJLG01000117
Bacteroidota
Pedobacter agri PB92 [AJLG]
12197
12269
+
Arg
CCT
[ENA]
¡û
>W1610612105
LGEL01000003
Bacteroidota
Pedobacter panaciterrae [LGEL]
98258
98184
-
Arg
CCT
[ENA]
¡û
>W1610716516
LLWP01000012
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
182603
182677
+
Arg
CCT
[ENA]
¡û
>W1610732777
LMKM01000036
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
51255
51183
-
Arg
CCT
[ENA]
¡û
>W1610733625
LMLE01000008
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
72165
72093
-
Arg
CCT
[ENA]
¡û
>W1610738676
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
74961
74889
-
Arg
CCT
[ENA]
¡û
>W1610739398
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
92998
92926
-
Arg
CCT
[ENA]
¡û
>W1610748675
LMZQ01000002
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
81222
81150
-
Arg
CCT
[ENA]
¡û
>W1610987095
LWHJ01000030
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
209702
209628
-
Arg
CCT
[ENA]
¡û
>W1710516044
FNCH01000003
Bacteroidota
Pedobacter terrae [FNCH]
118326
118398
+
Arg
CCT
[ENA]
¡û
>W1710519701
FNEX01000028
Bacteroidota
Pedobacter sp. ok626 [FNEX]
258
186
-
Arg
CCT
[ENA]
¡û
>W1710522097
FNGY01000009
Bacteroidota
Pedobacter steynii [FNGY]
305993
306065
+
Arg
CCT
[ENA]
¡û
>W1710522173
FNGZ01000013
Bacteroidota
Pedobacter antarcticus [FNGZ]
3761
3687
-
Arg
CCT
[ENA]
¡û
>W1710533310
FNRA01000007
Bacteroidota
Pedobacter hartonius [FNRA]
33125
33051
-
Arg
CCT
[ENA]
¡û
>W1710551652
FOGG01000001
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
1444
1372
-
Arg
CCT
[ENA]
¡û
>W1710555445
FOJM01000003
Bacteroidota
Pedobacter suwonensis [FOJM]
308152
308080
-
Arg
CCT
[ENA]
¡û
>W1710560854
FONS01000002
Bacteroidota
Pedobacter antarcticus [FONS]
234124
234198
+
Arg
CCT
[ENA]
¡û
>W1710583263
FQUQ01000007
Bacteroidota
Pedobacter caeni [FQUQ]
316513
316587
+
Arg
CCT
[ENA]
¡û
>W1710602985
FUYR01000002
Bacteroidota
Daejeonella lutea luteus [FUYR]
761976
761902
-
Arg
CCT
[ENA]
¡û
>W1710733611
LGEL01000003
Bacteroidota
Pedobacter panaciterrae [LGEL]
98258
98184
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK