This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659965 (34 seq.)
>C171067018
CP017751
Betaproteobacteria
Cupriavidus sp. USMAHM13 [CP017751, CP017752]
3591871
3591945
+
Gly
CCC
-
¡û
>W131052527
AMZA01000264
Betaproteobacteria
beta proteobacterium FWI2 [AMZA]
6675
6601
-
Gly
CCC
[ENA]
¡û
>W131063311
ANKP01000029
Betaproteobacteria
Cupriavidus sp. HMR-1 [ANKP]
37765
37691
-
Gly
CCC
[ENA]
¡û
>W131156223
AQPL01000249
Betaproteobacteria
Cupriavidus sp. WS [AQPL]
18962
18888
-
Gly
CCC
[ENA]
¡û
>W131164943
ARBE01000365
Betaproteobacteria
Cupriavidus sp. UYPR2.512 [ARBE]
80936
81010
+
Gly
CCC
[ENA]
¡û
>C018746
CP000352
Betaproteobacteria
Cupriavidus metallidurans CH34 [CP000352]
2937778
2937852
+
Gly
CCC
[Ensembl]
¡û
>WENV180026559
FTIU01002697
[FTIU] metagenome; soil
848
774
-
Gly
CCC
[ENA]
¢þ
>WENV180026935
FTIV01002418
[FTIV] metagenome; soil
230
156
-
Gly
CCC
[ENA]
¢þ
>W141152440
AXBU01000045
Betaproteobacteria
Cupriavidus metallidurans H1130 [AXBU]
301799
301873
+
Gly
CCC
[ENA]
¡û
>W141170553
AXYL01000050
Betaproteobacteria
Cupriavidus sp. JGI 0001016-D21 [AXYL]
7942
7868
-
Gly
CCC
[ENA]
¡û
>W141463896
JFJV02000102
Betaproteobacteria
Cupriavidus sp. SK-3 [JFJV]
111730
111656
-
Gly
CCC
[ENA]
¡û
>W141485116
JFZD01000008
Betaproteobacteria
Cupriavidus metallidurans [JFZD]
156532
156606
+
Gly
CCC
[ENA]
¡û
>C181134477
CP026544
Betaproteobacteria
Cupriavidus metallidurans Ni-2 [CP026544]
5559961
5560035
+
Gly
CCC
-
¡û
>C191117110
CP033969
Betaproteobacteria
Cupriavidus pauculus FDAARGOS_614 [CP033969, CP033970]
1674153
1674079
-
Gly
CCC
-
¡û
>C191161475
CP038635
Betaproteobacteria
Cupriavidus oxalaticus X32 [CP038634, CP038635]
2733731
2733805
+
Gly
CCC
-
¡û
>W09100002
AAAI03000001
Betaproteobacteria
Cupriavidus metallidurans CH34 [AAAI]
273169
273243
+
Gly
CCC
[ENA]
¡û
>W1910501957
FYAX01000013
Betaproteobacteria
Cupriavidus metallidurans NDB4MOL1 [FYAX]
429138
429064
-
Gly
CCC
[ENA]
¡û
>W1810017335
BGPQ01000013
Betaproteobacteria
Cupriavidus sp. P-10 [BGPQ]
1080
1006
-
Gly
CCC
[ENA]
¡û
>W1810177528
PJRP01000002
Betaproteobacteria
Cupriavidus pauculus UM1 [PJRP]
650404
650330
-
Gly
CCC
[ENA]
¡û
>W1810596751
QGGT01000001
Betaproteobacteria
Cupriavidus plantarum SLV-132 [QGGT]
2392089
2392163
+
Gly
CCC
[ENA]
¡û
>W1810685768
QKZN01000004
Betaproteobacteria
Cupriavidus alkaliphilus MLR2-44 [QKZN]
468911
468837
-
Gly
CCC
[ENA]
¡û
>W1810861222
QTTS01000003
Betaproteobacteria
Cupriavidus plantarum MA1-2za [QTTS]
221119
221193
+
Gly
CCC
[ENA]
¡û
>C151070639
CP010536
Betaproteobacteria
Cupriavidus basilensis 4G11 [CP010536, CP010537]
3375000
3375074
+
Gly
CCC
[Ensembl]
¡û
>W1510015022
BBQM01000010
Betaproteobacteria
Cupriavidus basilensis KF708 [BBQM]
116695
116621
-
Gly
CCC
[ENA]
¡û
>W1510015107
BBQN01000119
Betaproteobacteria
Cupriavidus pauculus KF709 [BBQN]
4359
4433
+
Gly
CCC
[ENA]
¡û
>W1511483812
JWMB01000012
Betaproteobacteria
Cupriavidus sp. SHE [JWMB]
8235
8161
-
Gly
CCC
[ENA]
¡û
>W1511534651
JYOD01000008
Betaproteobacteria
Burkholderiaceae bacterium 16 [JYOD]
140741
140667
-
Gly
CCC
[ENA]
¡û
>W121033610
AHJE01000072
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
49925
49851
-
Gly
CCC
[ENA]
¡û
>W1610053701
BBQI01000008
Betaproteobacteria
Cupriavidus sp. D384 [BBQI]
92875
92949
+
Gly
CCC
[ENA]
¡û
>W1710050079
BBQI01000008
Betaproteobacteria
Cupriavidus sp. D384 [BBQI]
92875
92949
+
Gly
CCC
[ENA]
¡û
>W1710511877
FMYZ01000001
Betaproteobacteria
Cupriavidus sp. YR651 [FMYZ]
1027613
1027687
+
Gly
CCC
[ENA]
¡û
>W1710525480
FNJO01000012
Betaproteobacteria
Ralstonia sp. 25mfcol4.1 [FNJO]
1346
1420
+
Gly
CCC
[ENA]
¡û
>W1710557307
FOKX01000001
Betaproteobacteria
Cupriavidus sp. OV038 [FOKX]
731880
731954
+
Gly
CCC
[ENA]
¡û
>W1710572163
FOWM01000001
Betaproteobacteria
Cupriavidus sp. OV096 [FOWM]
731880
731954
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK