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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660007 (126 seq.)
>W131109496
APHX01000009
Bacillota
Megasphaera sp. BL7 [APHX]
4462
4536
+
Gly
GCC
[ENA]
¡û
>W131109518
APHX01000027
Bacillota
Megasphaera sp. BL7 [APHX]
6143
6217
+
Gly
GCC
[ENA]
¡û
>W131109529
APHX01000058
Bacillota
Megasphaera sp. BL7 [APHX]
470
396
-
Gly
GCC
[ENA]
¡û
>W131109552
APHY01000001
Bacillota
Megasphaera sp. NM10 [APHY]
6538
6612
+
Gly
GCC
[ENA]
¡û
>W131109560
APHY01000002
Bacillota
Megasphaera sp. NM10 [APHY]
3393
3319
-
Gly
GCC
[ENA]
¡û
>W131109610
APHY01000098
Bacillota
Megasphaera sp. NM10 [APHY]
447
373
-
Gly
GCC
[ENA]
¡û
>WENV180119852
OASE01013180
[OASE] human gut metagenome; ENVO:feces
849
775
-
Gly
GCC
[ENA]
¢þ
>WENV180185186
OAWS01055954
[OAWS] human gut metagenome; faeces
150
76
-
Gly
GCC
[ENA]
¢þ
>WENV180235240
OBCT01011456
[OBCT] human gut metagenome; human gut
617
691
+
Gly
GCC
[ENA]
¢þ
>WENV180236029
OBCU01047796
[OBCU] human gut metagenome; human gut
4
78
+
Gly
GCC
[ENA]
¢þ
>WENV180236034
OBCU01049886
[OBCU] human gut metagenome; human gut
132
58
-
Gly
GCC
[ENA]
¢þ
>WENV180306027
OBJO01044674
[OBJO] human gut metagenome; human gut
78
4
-
Gly
GCC
[ENA]
¢þ
>WENV180405366
OBTM01002979
[OBTM] human gut metagenome; ENVO:feces
1411
1485
+
Gly
GCC
[ENA]
¢þ
>WENV180574910
OCLX01013572
[OCLX] human gut metagenome; human gut
214
140
-
Gly
GCC
[ENA]
¢þ
>WENV180576022
OCLY01082005
[OCLY] human gut metagenome; human gut
78
4
-
Gly
GCC
[ENA]
¢þ
>WENV180577262
OCMA01005882
[OCMA] human gut metagenome; human gut
1671
1597
-
Gly
GCC
[ENA]
¢þ
>WENV180578855
OCMC01003470
[OCMC] human gut metagenome; human gut
1982
1908
-
Gly
GCC
[ENA]
¢þ
>WENV180578903
OCMC01005783
[OCMC] human gut metagenome; human gut
647
721
+
Gly
GCC
[ENA]
¢þ
>WENV180578924
OCMC01006589
[OCMC] human gut metagenome; human gut
4
78
+
Gly
GCC
[ENA]
¢þ
>WENV180597257
OCPK01018536
[OCPK] human gut metagenome; ENVO:feces
283
357
+
Gly
GCC
[ENA]
¢þ
>WENV181394658
OFRZ01000357
[OFRZ] human gut metagenome; human gut
14064
14138
+
Gly
GCC
[ENA]
¢þ
>WENV181435275
OGDF01003024
[OGDF] human gut metagenome; human gut
5808
5882
+
Gly
GCC
[ENA]
¢þ
>WENV181488953
OGFR01002491
[OGFR] metagenome; Human gut stool
2911
2837
-
Gly
GCC
[ENA]
¢þ
>WENV181506290
OGGM01000623
[OGGM] metagenome; Human gut stool
22311
22237
-
Gly
GCC
[ENA]
¢þ
>WENV181511450
OGGS01001936
[OGGS] metagenome; Human gut stool
3319
3393
+
Gly
GCC
[ENA]
¢þ
>WENV181577330
OGJX01000677
[OGJX] metagenome; Human gut stool
29729
29655
-
Gly
GCC
[ENA]
¢þ
>WENV181775138
OGRF01000954
[OGRF] human gut metagenome; faeces
14678
14752
+
Gly
GCC
[ENA]
¢þ
>WENV181868322
OGWX01000035
[OGWX] human gut metagenome; faeces
60678
60752
+
Gly
GCC
[ENA]
¢þ
>WENV181876456
OGXC01011433
[OGXC] human gut metagenome; faeces
1709
1635
-
Gly
GCC
[ENA]
¢þ
>WENV181885140
OGXJ01007009
[OGXJ] human gut metagenome; faeces
3737
3663
-
Gly
GCC
[ENA]
¢þ
>WENV181905410
OGXY01000148
[OGXY] human gut metagenome; faeces
31023
30949
-
Gly
GCC
[ENA]
¢þ
>WENV181911211
OGYD01000613
[OGYD] human gut metagenome; faeces
29663
29589
-
Gly
GCC
[ENA]
¢þ
>WENV181912636
OGYE01000372
[OGYE] human gut metagenome; faeces
16750
16676
-
Gly
GCC
[ENA]
¢þ
>WENV181923542
OGYL01000837
[OGYL] human gut metagenome; faeces
15011
14937
-
Gly
GCC
[ENA]
¢þ
>WENV181931645
OGYQ01001430
[OGYQ] human gut metagenome; faeces
11680
11754
+
Gly
GCC
[ENA]
¢þ
>WENV181933871
OGYT01000236
[OGYT] human gut metagenome; faeces
41008
41082
+
Gly
GCC
[ENA]
¢þ
>WENV181944796
OGZB01000071
[OGZB] human gut metagenome; faeces
28442
28368
-
Gly
GCC
[ENA]
¢þ
>WENV181952365
OGZI01000192
[OGZI] human gut metagenome; faeces
31026
30952
-
Gly
GCC
[ENA]
¢þ
>WENV181958748
OGZM01000421
[OGZM] human gut metagenome; faeces
13906
13980
+
Gly
GCC
[ENA]
¢þ
>WENV181961990
OGZO01044795
[OGZO] human gut metagenome; faeces
1000
926
-
Gly
GCC
[ENA]
¢þ
>WENV181969934
OGZX01001073
[OGZX] human gut metagenome; faeces
29582
29508
-
Gly
GCC
[ENA]
¢þ
>WENV181976078
OHAD01000225
[OHAD] human gut metagenome; faeces
38537
38611
+
Gly
GCC
[ENA]
¢þ
>WENV182008249
OHBJ01000115
[OHBJ] human gut metagenome; faeces
9662
9736
+
Gly
GCC
[ENA]
¢þ
>WENV182273447
OHUJ01000512
[OHUJ] human gut metagenome; feces
7266
7340
+
Gly
GCC
[ENA]
¢þ
>WENV182281369
OHVB01001623
[OHVB] human gut metagenome; feces
2113
2039
-
Gly
GCC
[ENA]
¢þ
>WENV182282253
OHVH01005361
[OHVH] human gut metagenome; feces
630
556
-
Gly
GCC
[ENA]
¢þ
>WENV182291436
OHVZ01002713
[OHVZ] human gut metagenome; feces
150
76
-
Gly
GCC
[ENA]
¢þ
>WENV182292604
OHWB01001068
[OHWB] human gut metagenome; feces
2717
2791
+
Gly
GCC
[ENA]
¢þ
>WENV182334237
OHZM01003131
[OHZM] human gut metagenome; feces
2748
2822
+
Gly
GCC
[ENA]
¢þ
>WENV182336087
OHZS01002985
[OHZS] human gut metagenome; feces
4396
4470
+
Gly
GCC
[ENA]
¢þ
>WENV182348534
OIAZ01006193
[OIAZ] human gut metagenome; feces
1015
941
-
Gly
GCC
[ENA]
¢þ
>WENV182350558
OIBF01007126
[OIBF] human gut metagenome; feces
1599
1673
+
Gly
GCC
[ENA]
¢þ
>WENV182353608
OIBL01015388
[OIBL] human gut metagenome; feces
981
1055
+
Gly
GCC
[ENA]
¢þ
>WENV182362003
OICD01003491
[OICD] human gut metagenome; feces
5000
5074
+
Gly
GCC
[ENA]
¢þ
>WENV182364366
OICH01002281
[OICH] human gut metagenome; feces
1130
1056
-
Gly
GCC
[ENA]
¢þ
>WENV182376014
OIDD01002112
[OIDD] human gut metagenome; feces
7318
7392
+
Gly
GCC
[ENA]
¢þ
>WENV182389729
OIED01002694
[OIED] human gut metagenome; feces
150
76
-
Gly
GCC
[ENA]
¢þ
>WENV182509989
OIWK01000418
[OIWK] human gut metagenome; faeces
2703
2629
-
Gly
GCC
[ENA]
¢þ
>WENV182659623
OJML01025391
[OJML] human gut metagenome; feces
323
397
+
Gly
GCC
[ENA]
¢þ
>WENV182732814
OJQB01033662
[OJQB] human gut metagenome; stool sample
393
319
-
Gly
GCC
[ENA]
¢þ
>WENV182757643
OJRH01015361
[OJRH] human gut metagenome; stool sample
149
75
-
Gly
GCC
[ENA]
¢þ
>WENV182767357
OJRV01000282
[OJRV] human gut metagenome; human gut
38891
38965
+
Gly
GCC
[ENA]
¢þ
>WENV182769103
OJRW01000431
[OJRW] human gut metagenome; human gut
9616
9690
+
Gly
GCC
[ENA]
¢þ
>WENV182770506
OJRX01000284
[OJRX] human gut metagenome; human gut
31270
31196
-
Gly
GCC
[ENA]
¢þ
>WENV182772187
OJRY01000449
[OJRY] human gut metagenome; human gut
9002
9076
+
Gly
GCC
[ENA]
¢þ
>WENV182773317
OJRZ01000299
[OJRZ] human gut metagenome; human gut
22329
22403
+
Gly
GCC
[ENA]
¢þ
>WENV182774621
OJSA01000483
[OJSA] human gut metagenome; human gut
12426
12500
+
Gly
GCC
[ENA]
¢þ
>WENV182775823
OJSB01000486
[OJSB] human gut metagenome; human gut
7841
7767
-
Gly
GCC
[ENA]
¢þ
>WENV182776844
OJSC01000147
[OJSC] human gut metagenome; human gut
31270
31196
-
Gly
GCC
[ENA]
¢þ
>WENV182780896
OJSE01000939
[OJSE] human gut metagenome; human gut
9596
9670
+
Gly
GCC
[ENA]
¢þ
>WENV182782524
OJSF01000502
[OJSF] human gut metagenome; human gut
31270
31196
-
Gly
GCC
[ENA]
¢þ
>WENV182783438
OJSG01000121
[OJSG] human gut metagenome; human gut
31270
31196
-
Gly
GCC
[ENA]
¢þ
>WENV182783497
OJSG01000185
[OJSG] human gut metagenome; human gut
64014
63940
-
Gly
GCC
[ENA]
¢þ
>WENV182784633
OJSH01000578
[OJSH] human gut metagenome; human gut
9653
9727
+
Gly
GCC
[ENA]
¢þ
>WENV182785724
OJSI01000369
[OJSI] human gut metagenome; human gut
19176
19250
+
Gly
GCC
[ENA]
¢þ
>WENV182786685
OJSJ01000224
[OJSJ] human gut metagenome; human gut
31270
31196
-
Gly
GCC
[ENA]
¢þ
>WENV182787431
OJSK01000139
[OJSK] human gut metagenome; human gut
59945
60019
+
Gly
GCC
[ENA]
¢þ
>WENV182789089
OJSL01003080
[OJSL] human gut metagenome; human gut
5321
5395
+
Gly
GCC
[ENA]
¢þ
>WENV182790450
OJSM01016210
[OJSM] human gut metagenome; human gut
582
656
+
Gly
GCC
[ENA]
¢þ
>WENV182791658
OJSN01012588
[OJSN] human gut metagenome; human gut
949
875
-
Gly
GCC
[ENA]
¢þ
>WENV182793065
OJSO01051502
[OJSO] human gut metagenome; human gut
209
283
+
Gly
GCC
[ENA]
¢þ
>WENV182793628
OJSP01000824
[OJSP] human gut metagenome; human gut
8935
8861
-
Gly
GCC
[ENA]
¢þ
>WENV182795612
OJSQ01001255
[OJSQ] human gut metagenome; human gut
18695
18769
+
Gly
GCC
[ENA]
¢þ
>WENV182801485
OJUG01000920
[OJUG] human gut metagenome; human gut
9620
9694
+
Gly
GCC
[ENA]
¢þ
>WENV182871744
OKRV01000238
[OKRV] human gut metagenome; faeces
2086
2160
+
Gly
GCC
[ENA]
¢þ
>WENV182875033
OKRX01000020
[OKRX] human gut metagenome; faeces
30549
30475
-
Gly
GCC
[ENA]
¢þ
>WENV182882275
OKSB01000205
[OKSB] human gut metagenome; faeces
62654
62580
-
Gly
GCC
[ENA]
¢þ
>WENV182889662
OKSF01001070
[OKSF] human gut metagenome; faeces
15844
15770
-
Gly
GCC
[ENA]
¢þ
>WENV182917873
OKTV01007595
[OKTV] human gut metagenome; feces
118
44
-
Gly
GCC
[ENA]
¢þ
>WENV182924941
OKUI01003391
[OKUI] human gut metagenome; feces
313
239
-
Gly
GCC
[ENA]
¢þ
>WENV182926972
OKUM01004419
[OKUM] human gut metagenome; feces
4504
4578
+
Gly
GCC
[ENA]
¢þ
>WENV182928446
OKUO01000714
[OKUO] human gut metagenome; feces
4270
4344
+
Gly
GCC
[ENA]
¢þ
>WENV182932390
OKUU01003630
[OKUU] human gut metagenome; feces
2289
2363
+
Gly
GCC
[ENA]
¢þ
>WENV183023105
OLFS01000128
[OLFS] human gut metagenome; faeces
49225
49299
+
Gly
GCC
[ENA]
¢þ
>WENV183027775
OLFV01000397
[OLFV] human gut metagenome; faeces
9837
9763
-
Gly
GCC
[ENA]
¢þ
>WENV183089470
OLJW01005937
[OLJW] human gut metagenome; human gut
451
377
-
Gly
GCC
[ENA]
¢þ
>WENV183091554
OLKG01001194
[OLKG] human gut metagenome; human gut
1430
1356
-
Gly
GCC
[ENA]
¢þ
>WENV183207052
OLQA01005788
[OLQA] human gut metagenome; faeces
4993
4919
-
Gly
GCC
[ENA]
¢þ
>WENV183270324
OLRV01005910
[OLRV] human gut metagenome; faeces
291
217
-
Gly
GCC
[ENA]
¢þ
>WENV183527126
ONZW01000040
[ONZW] human gut metagenome; human gut
63497
63571
+
Gly
GCC
[ENA]
¢þ
>WENV183527343
ONZW01000268
[ONZW] human gut metagenome; human gut
45741
45815
+
Gly
GCC
[ENA]
¢þ
>WENV183580555
OOCN01000096
[OOCN] human gut metagenome; human gut
30728
30654
-
Gly
GCC
[ENA]
¢þ
>WENV183599924
OODH01023417
[OODH] human gut metagenome; human gut
602
676
+
Gly
GCC
[ENA]
¢þ
>WENV183608621
OODQ01000023
[OODQ] human gut metagenome; human gut
107233
107159
-
Gly
GCC
[ENA]
¢þ
>WENV183608773
OODQ01000157
[OODQ] human gut metagenome; human gut
52188
52262
+
Gly
GCC
[ENA]
¢þ
>WENV183608934
OODQ01000521
[OODQ] human gut metagenome; human gut
27955
28029
+
Gly
GCC
[ENA]
¢þ
>WENV170074555
CDZT01000026
[CDZT] gut metagenome; human stools
247
321
+
Gly
GCC
[ENA]
¢þ
>WENV170075472
CDZT01035576
[CDZT] gut metagenome; human stools
30526
30452
-
Gly
GCC
[ENA]
¢þ
>WENV170075645
CDZT01041540
[CDZT] gut metagenome; human stools
27578
27652
+
Gly
GCC
[ENA]
¢þ
>WENV170076139
CDZT01057484
[CDZT] gut metagenome; human stools
39048
39122
+
Gly
GCC
[ENA]
¢þ
>WENV170076651
CDZU01009633
[CDZU] gut metagenome; human stools
43341
43267
-
Gly
GCC
[ENA]
¢þ
>WENV170077547
CDZU01034256
[CDZU] gut metagenome; human stools
73
1
-
Gly
GCC
[ENA]
¢þ
>WENV170078997
CDZV01046855
[CDZV] gut metagenome; human stools
5843
5769
-
Gly
GCC
[ENA]
¢þ
>C181156428
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
1234529
1234603
+
Gly
GCC
-
¡û
>C181156494
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
1050605
1050679
+
Gly
GCC
-
¡û
>C181156533
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
705478
705404
-
Gly
GCC
-
¡û
>W141559860
JHXC01000020
Bacillota
Megasphaera elsdenii T81 [JHXC]
15929
15855
-
Gly
GCC
[ENA]
¡û
>W1911179385
NQMW01000003
Bacillota
Megasphaera elsdenii indica [NQMW]
38986
39060
+
Gly
GCC
[ENA]
¡û
>W1511353886
JRPS01000013
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
47781
47855
+
Gly
GCC
[ENA]
¡û
>C161021127
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
832199
832273
+
Gly
GCC
-
¡û
>C161104337
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
784775
784849
+
Gly
GCC
[Ensembl]
¡û
>C161104381
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
440057
439983
-
Gly
GCC
[Ensembl]
¡û
>WENV083278
BAAX01010820
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
1041
967
-
Gly
GCC
[ENA]
>W1710564582
FOQP01000006
Bacillota
Megasphaera elsdenii [FOQP]
213219
213145
-
Gly
GCC
[ENA]
¡û
>W1710564612
FOQP01000014
Bacillota
Megasphaera elsdenii [FOQP]
51575
51649
+
Gly
GCC
[ENA]
¡û
>W1710589770
FRAK01000011
Bacillota
Megasphaera elsdenii [FRAK]
15817
15743
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK