This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660235 (14 seq.)
>W141291545
JASZ01000285
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
14074
14148
+
Glu
TTC
[ENA]
¡û
>WENV170009870
APMI01004377
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7732
7806
+
Glu
TTC
[ENA]
¢þ
>C181225813
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
1944164
1944092
-
Glu
TTC
-
¡û
>C191025419
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
2131688
2131616
-
Glu
TTC
-
¡û
>C191116016
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
3625583
3625509
-
Glu
TTC
-
¡û
>C191116481
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
371850
371776
-
Glu
TTC
-
¡û
>C191120903
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
2338735
2338807
+
Glu
TTC
-
¡û
>C191120958
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
506242
506170
-
Glu
TTC
-
¡û
>C09106221
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
2397641
2397567
-
Glu
TTC
[Ensembl]
¡û
>W1910933671
NIUY01000003
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
15204
15276
+
Glu
TTC
[ENA]
¡û
>W1810234374
PPEI02000003
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
604685
604611
-
Glu
TTC
[ENA]
¡û
>W1610095088
CYUH01000013
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
311862
311788
-
Glu
TTC
[ENA]
¡û
>W1710097883
CYUH01000013
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
311862
311788
-
Glu
TTC
[ENA]
¡û
>W1710598410
FTNZ01000003
Bacteroidota
Chryseobacterium joostei [FTNZ]
550657
550583
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK