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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660268 (84 seq.)
>W1711228142
LXWI01000017
Campylobacterota
Helicobacter pullorum [LXWI]
41657
41731
+
Asn
GTT
[ENA]
¡û
>W1711302766
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
65529
65603
+
Asn
GTT
[ENA]
¡û
>W1711302785
MAJF01000062
Campylobacterota
Helicobacter pullorum [MAJF]
17
91
+
Asn
GTT
[ENA]
¡û
>W1711302796
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
8108
8034
-
Asn
GTT
[ENA]
¡û
>W1711306340
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
65555
65629
+
Asn
GTT
[ENA]
¡û
>W1711306366
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
8123
8049
-
Asn
GTT
[ENA]
¡û
>W1711307555
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
79256
79330
+
Asn
GTT
[ENA]
¡û
>W1711307587
MAPA01000037
Campylobacterota
Helicobacter pullorum [MAPA]
60
134
+
Asn
GTT
[ENA]
¡û
>W1711307601
MAPA01000101
Campylobacterota
Helicobacter pullorum [MAPA]
14836
14910
+
Asn
GTT
[ENA]
¡û
>W1711307622
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
71381
71455
+
Asn
GTT
[ENA]
¡û
>W1711307650
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
8122
8048
-
Asn
GTT
[ENA]
¡û
>W1711307689
MAPD01000020
Campylobacterota
Helicobacter pullorum [MAPD]
37867
37941
+
Asn
GTT
[ENA]
¡û
>W1711307716
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
71849
71923
+
Asn
GTT
[ENA]
¡û
>WENV180768707
ODIG01013898
[ODIG] human metagenome; G_DNA_Tongue dorsum
2536
2462
-
Asn
GTT
[ENA]
¢þ
>WENV180820874
ODJR01084214
[ODJR] human metagenome; G_DNA_Tongue dorsum
180
106
-
Asn
GTT
[ENA]
¢þ
>WENV180831368
ODKB01122540
[ODKB] human metagenome; G_DNA_Tongue dorsum
288
214
-
Asn
GTT
[ENA]
¢þ
>WENV180882973
ODMC01001147
[ODMC] human metagenome; G_DNA_Tongue dorsum
7682
7608
-
Asn
GTT
[ENA]
¢þ
>WENV180931147
ODTP01001686
[ODTP] human metagenome; G_DNA_Tongue dorsum
11394
11320
-
Asn
GTT
[ENA]
¢þ
>WENV180948408
ODUG01001142
[ODUG] human metagenome; G_DNA_Tongue dorsum
8755
8681
-
Asn
GTT
[ENA]
¢þ
>WENV180951342
ODUH01018222
[ODUH] human metagenome; G_DNA_Subgingival plaque
1563
1489
-
Asn
GTT
[ENA]
¢þ
>WENV180955042
ODUJ01026294
[ODUJ] human metagenome; G_DNA_Tongue dorsum
1075
1001
-
Asn
GTT
[ENA]
¢þ
>W08010275
ABQS01000001
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
19183
19112
-
Asn
GTT
[ENA]
¡û
>W08010360
ABQU01000022
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
10044
9973
-
Asn
GTT
[ENA]
¡û
>WENV181040767
ODXS01000921
[ODXS] human metagenome; G_DNA_Tongue dorsum
10508
10582
+
Asn
GTT
[ENA]
¢þ
>WENV181057771
ODYL01001048
[ODYL] human metagenome; G_DNA_Tongue dorsum
10457
10531
+
Asn
GTT
[ENA]
¢þ
>WENV181095228
OEBY01004456
[OEBY] human metagenome; G_DNA_Tongue dorsum
6205
6131
-
Asn
GTT
[ENA]
¢þ
>WENV181098042
OECA01068799
[OECA] human metagenome; G_DNA_Tongue dorsum
397
323
-
Asn
GTT
[ENA]
¢þ
>WENV181120380
OEFJ01064289
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
75
149
+
Asn
GTT
[ENA]
¢þ
>WENV181140088
OEGN01057146
[OEGN] human metagenome; G_DNA_Tongue dorsum
187
261
+
Asn
GTT
[ENA]
¢þ
>WENV181151841
OEHW01167058
[OEHW] human metagenome; G_DNA_Tongue dorsum
124
50
-
Asn
GTT
[ENA]
¢þ
>WENV181203516
OERW01000413
[OERW] metagenome; Caecal content
1518
1592
+
Asn
GTT
[ENA]
¢þ
>WENV170635954
JFBN01012145
[JFBN] chicken gut metagenome; ceca of Broiler chicken
8156
8082
-
Asn
GTT
[ENA]
¢þ
>C181047050
CP020867
Campylobacterota
Campylobacter cuniculorum DSM 23162 = LMG 24588 [CP020867]
458000
458074
+
Asn
GTT
-
¡û
>C181054498
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1164340
1164266
-
Asn
GTT
-
¡û
>C181213880
LS483446
Campylobacterota
Helicobacter mustelae NCTC12198 [LS483446]
754857
754783
-
Asn
GTT
-
¡û
>C191213257
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1505309
1505235
-
Asn
GTT
-
¡û
>W141558677
JHWC01000007
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
114737
114811
+
Asn
GTT
[ENA]
¡û
>W141562786
JHZL01000032
Campylobacterota
Campylobacter cuniculorum DSM 23162 [JHZL]
2526
2600
+
Asn
GTT
[ENA]
¡û
>W09119182
ACDO01000027
Campylobacterota
Helicobacter winghamensis ATCC BAA-430 [ACDO]
61298
61224
-
Asn
GTT
[ENA]
¡û
>W09134349
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
299691
299617
-
Asn
GTT
[ENA]
¡û
>W1910546593
FZMV01000006
Campylobacterota
Helicobacter pullorum [FZMV]
8104
8030
-
Asn
GTT
[ENA]
¡û
>W1910546670
FZMX01000008
Campylobacterota
Helicobacter pullorum [FZMX]
7130
7056
-
Asn
GTT
[ENA]
¡û
>W1910549581
FZPJ01000010
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
139104
139178
+
Asn
GTT
[ENA]
¡û
>W1910549726
FZPN01000009
Campylobacterota
Helicobacter canadensis [FZPN]
105651
105725
+
Asn
GTT
[ENA]
¡û
>W1910550295
FZQU01000003
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZQU]
101249
101323
+
Asn
GTT
[ENA]
¡û
>W1910550495
FZQY01000008
Campylobacterota
Helicobacter sp. 'house sparrow 1' [FZQY]
101250
101324
+
Asn
GTT
[ENA]
¡û
>W1910584333
JXTX01000005
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
12408
12334
-
Asn
GTT
[ENA]
¡û
>W1910663827
MBPH01000040
Campylobacterota
Helicobacter winghamensis 196_13 [MBPH]
12098
12172
+
Asn
GTT
[ENA]
¡û
>W1910663865
MBPI01000038
Campylobacterota
Helicobacter winghamensis 228_13 [MBPI]
61340
61266
-
Asn
GTT
[ENA]
¡û
>W1910663898
MBPJ01000044
Campylobacterota
Helicobacter winghamensis 294_13 [MBPJ]
12094
12168
+
Asn
GTT
[ENA]
¡û
>W1910663902
MBPK01000001
Campylobacterota
Helicobacter winghamensis 295_13 [MBPK]
12094
12168
+
Asn
GTT
[ENA]
¡û
>W1910663938
MBPL01000001
Campylobacterota
Helicobacter winghamensis 296_13 [MBPL]
12093
12167
+
Asn
GTT
[ENA]
¡û
>W1910756202
MLAQ01000004
Campylobacterota
Helicobacter sp. 12S02232-10 [MLAQ]
17704
17630
-
Asn
GTT
[ENA]
¡û
>W1910914926
NHYK01000006
Campylobacterota
Helicobacter sp. 10-6591 [NHYK]
67352
67278
-
Asn
GTT
[ENA]
¡û
>W1910914963
NHYL01000002
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
117475
117549
+
Asn
GTT
[ENA]
¡û
>W1911709008
QPGP01000023
Campylobacterota
Campylobacter novaezeelandiae W677a [QPGP]
13842
13768
-
Asn
GTT
[ENA]
¡û
>W1911709052
QPGQ01000015
Campylobacterota
Campylobacter novaezeelandiae B1491 [QPGQ]
14064
13990
-
Asn
GTT
[ENA]
¡û
>W1810046644
NXLS01000008
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
1852
1778
-
Asn
GTT
[ENA]
¡û
>W1810046810
NXLX01000008
Campylobacterota
Helicobacter anseris MIT 04-9362 [NXLX]
35995
36069
+
Asn
GTT
[ENA]
¡û
>C10107598
FN555004
Campylobacterota
Helicobacter mustelae 12198 [FN555004]
756342
756268
-
Asn
GTT
[Ensembl]
¡û
>W1511353183
JRPA01000413
Campylobacterota
Helicobacter sp. MIT 05-5294 [JRPA]
1412
1486
+
Asn
GTT
[ENA]
¡û
>W1511353216
JRPB01000006
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
218
144
-
Asn
GTT
[ENA]
¡û
>W1511353254
JRPC01000047
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
1631
1705
+
Asn
GTT
[ENA]
¡û
>W1610522067
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
8065
7991
-
Asn
GTT
[ENA]
¡û
>W1610522102
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
8175
8101
-
Asn
GTT
[ENA]
¡û
>W1610522137
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
8121
8047
-
Asn
GTT
[ENA]
¡û
>W1610522225
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
8110
8036
-
Asn
GTT
[ENA]
¡û
>W1611012059
LXWI01000017
Campylobacterota
Helicobacter pullorum [LXWI]
41657
41731
+
Asn
GTT
[ENA]
¡û
>W1611053091
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
65529
65603
+
Asn
GTT
[ENA]
¡û
>W1611053110
MAJF01000062
Campylobacterota
Helicobacter pullorum [MAJF]
17
91
+
Asn
GTT
[ENA]
¡û
>W1611053121
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
8108
8034
-
Asn
GTT
[ENA]
¡û
>W1611055694
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
65555
65629
+
Asn
GTT
[ENA]
¡û
>W1611055720
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
8123
8049
-
Asn
GTT
[ENA]
¡û
>W1611055838
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
79256
79330
+
Asn
GTT
[ENA]
¡û
>W1611055870
MAPA01000037
Campylobacterota
Helicobacter pullorum [MAPA]
60
134
+
Asn
GTT
[ENA]
¡û
>W1611055884
MAPA01000101
Campylobacterota
Helicobacter pullorum [MAPA]
14836
14910
+
Asn
GTT
[ENA]
¡û
>W1611055905
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
71381
71455
+
Asn
GTT
[ENA]
¡û
>W1611055933
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
8122
8048
-
Asn
GTT
[ENA]
¡û
>W1611055972
MAPD01000020
Campylobacterota
Helicobacter pullorum [MAPD]
37867
37941
+
Asn
GTT
[ENA]
¡û
>W1611055999
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
71849
71923
+
Asn
GTT
[ENA]
¡û
>W1710621993
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
8065
7991
-
Asn
GTT
[ENA]
¡û
>W1710622028
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
8175
8101
-
Asn
GTT
[ENA]
¡û
>W1710622063
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
8121
8047
-
Asn
GTT
[ENA]
¡û
>W1710622151
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
8110
8036
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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