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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660347 (38 seq.)
>W1710934829
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
5343533
5343607
+
Val
GAC
[ENA]
¡û
>W1711388708
MEIA01000263
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
5138
5212
+
Val
GAC
[ENA]
¡û
>W131165205
ARBJ01000051
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
26779
26853
+
Val
GAC
[ENA]
¡û
>C171131326
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
7711580
7711506
-
Val
GAC
-
¡û
>C171131329
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
7672039
7671965
-
Val
GAC
-
¡û
>C181078610
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
7710764
7710690
-
Val
GAC
-
¡û
>C181078613
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
7671223
7671149
-
Val
GAC
-
¡û
>C191007441
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
843497
843425
-
Val
GAC
-
¡û
>C191007444
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
831460
831388
-
Val
GAC
-
¡û
>C191026496
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
6813408
6813334
-
Val
GAC
-
¡û
>C191026499
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
6772923
6772849
-
Val
GAC
-
¡û
>W141758315
JNYN01001277
Actinomycetota
Actinoplanes liguriensis [JNYN]
87
161
+
Val
GAC
[ENA]
¡û
>W141758673
JNYT01001835
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
76
2
-
Val
GAC
[ENA]
¡û
>W141775065
JOJL01000001
Actinomycetota
Actinoplanes subtropicus [JOJL]
231029
231103
+
Val
GAC
[ENA]
¡û
>W1910547311
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
253078
253004
-
Val
GAC
[ENA]
¡û
>W1910547314
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
196767
196693
-
Val
GAC
[ENA]
¡û
>W1911492540
OBDY01000010
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
190387
190315
-
Val
GAC
[ENA]
¡û
>W1911676726
QHHV01000234
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
1125
1053
-
Val
GAC
[ENA]
¡û
>W1810356518
PVMZ01000006
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
162896
162822
-
Val
GAC
[ENA]
¡û
>W1810368166
PVZG01000016
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
175579
175653
+
Val
GAC
[ENA]
¡û
>W1810596600
QGGR01000002
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
701102
701028
-
Val
GAC
[ENA]
¡û
>W1810596603
QGGR01000002
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
686547
686473
-
Val
GAC
[ENA]
¡û
>W1810694909
QLMJ01000005
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
13312
13384
+
Val
GAC
[ENA]
¡û
>W1810694912
QLMJ01000005
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
22993
23065
+
Val
GAC
[ENA]
¡û
>ENV09003096
ADGO01004494
Compost metagenome contig00001
414
340
-
Val
GAC
[ENA]
¡û
>W1511355833
JRTT01000022
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
93500
93574
+
Val
GAC
[ENA]
¡û
>W1511355836
JRTT01000022
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
104047
104121
+
Val
GAC
[ENA]
¡û
>W1511545111
JZKF01000019
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
24
98
+
Val
GAC
[ENA]
¡û
>W1511545130
JZKF01000071
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
47911
47837
-
Val
GAC
[ENA]
¡û
>W1511545151
JZKF01000290
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
195
269
+
Val
GAC
[ENA]
¡û
>C121001061
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7297924
7297850
-
Val
GAC
[Ensembl]
¡û
>C121001064
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7287501
7287427
-
Val
GAC
[Ensembl]
¡û
>C121007276
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
7711404
7711330
-
Val
GAC
[Ensembl]
¡û
>C121007279
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
7671863
7671789
-
Val
GAC
[Ensembl]
¡û
>C131015972
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
7495334
7495408
+
Val
GAC
[Ensembl]
¡û
>W1610792317
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
5343533
5343607
+
Val
GAC
[ENA]
¡û
>W1710561010
FONV01000005
Actinomycetota
Actinoplanes philippinensis [FONV]
657504
657430
-
Val
GAC
[ENA]
¡û
>W1710561013
FONV01000005
Actinomycetota
Actinoplanes philippinensis [FONV]
637876
637802
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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