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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660380 (77 seq.)
>W1710889763
LNBC01000034
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
6889
6815
-
Thr
GGT
[ENA]
¡û
>W1711350394
MCRJ01000084
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
11719
11793
+
Thr
GGT
[ENA]
¡û
>W1711421719
MHZR01000046
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
22450
22376
-
Thr
GGT
[ENA]
¡û
>W1711421765
MHZS01000075
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
6514
6588
+
Thr
GGT
[ENA]
¡û
>W1712104557
NIPU01000019
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
135150
135076
-
Thr
GGT
[ENA]
¡û
>W1712104594
NIPV01000038
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
76353
76279
-
Thr
GGT
[ENA]
¡û
>W1712104619
NIPW01000006
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
23331
23405
+
Thr
GGT
[ENA]
¡û
>W1712104675
NIPX01000007
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
20462
20536
+
Thr
GGT
[ENA]
¡û
>W1712104699
NIPY01000007
Alphaproteobacteria
Haematobacter massiliensis [NIPY]
135136
135062
-
Thr
GGT
[ENA]
¡û
>C171101163
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
1657294
1657220
-
Thr
GGT
-
¡û
>C171110755
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
170409
170483
+
Thr
GGT
-
¡û
>W131158884
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
460261
460335
+
Thr
GGT
[ENA]
¡û
>W131186353
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
2599600
2599674
+
Thr
GGT
[ENA]
¡û
>W131214683
ATUJ01000018
Alphaproteobacteria
Paracoccus zeaxanthinifaciens ATCC 21588 [ATUJ]
11900
11826
-
Thr
GGT
[ENA]
¡û
>W131224015
AUCM01000004
Alphaproteobacteria
Gemmobacter nectariphilus DSM 15620 [AUCM]
377199
377125
-
Thr
GGT
[ENA]
¡û
>C016020
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1965201
1965275
+
Thr
GGT
[Ensembl]
¡û
>w014848
AAOT01000012
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
90311
90235
-
Thr
GGT
[ENA]
¡û
>W141043766
AMGO01000012
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
129071
128997
-
Thr
GGT
[ENA]
¡û
>W141260953
CCAO010000012
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
51495
51421
-
Thr
GGT
[ENA]
¡û
>WENV183512903
OMKS01001770
[OMKS] sediment metagenome; hot spring sediment
8611
8685
+
Thr
GGT
[ENA]
¢þ
>WENV183731020
PJTS01004004
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
809
883
+
Thr
GGT
[ENA]
¢þ
>WENV183733752
PJTY01022205
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
28
102
+
Thr
GGT
[ENA]
¢þ
>WENV183734695
PJTZ01042092
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
119
193
+
Thr
GGT
[ENA]
¢þ
>WENV170552117
CXWJ01040009
[CXWJ] wastewater metagenome; activated sludge
569
495
-
Thr
GGT
[ENA]
¢þ
>WENV170553155
CXWK01009287
[CXWK] wastewater metagenome; activated sludge
3507
3433
-
Thr
GGT
[ENA]
¢þ
>WENV170564889
CZPY01000034
[CZPY] metagenome; PAHs-polluted Soil
6889
6815
-
Thr
GGT
[ENA]
¢þ
>WENV170565886
FKKE01001827
[FKKE] freshwater metagenome; freshwater
8973
8899
-
Thr
GGT
[ENA]
¢þ
>WENV170720228
LSQX01145332
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
742
668
-
Thr
GGT
[ENA]
¢þ
>W141461720
JFGS01000015
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
19280
19354
+
Thr
GGT
[ENA]
¡û
>PL191000049
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1965201
1965275
+
Thr
GGT
[Ensembl]
¡û
>W09103041
AAIT01000003
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
341643
341717
+
Thr
GGT
[ENA]
¡û
>C181117199
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
1480771
1480697
-
Thr
GGT
-
¡û
>C181227356
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
839251
839325
+
Thr
GGT
-
¡û
>W141523460
JGYG01000002
Alphaproteobacteria
Haematobacter massiliensis [JGYG]
404143
404217
+
Thr
GGT
[ENA]
¡û
>C191134370
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
706491
706565
+
Thr
GGT
-
¡û
>C191144242
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
478445
478519
+
Thr
GGT
-
¡û
>W141814299
JQGB01000006
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
79527
79601
+
Thr
GGT
[ENA]
¡û
>W1910443324
FWFZ01000005
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
16782
16856
+
Thr
GGT
[ENA]
¡û
>W1911283618
NTJD01000001
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
434806
434732
-
Thr
GGT
[ENA]
¡û
>W1911491920
OAOQ01000005
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
200627
200701
+
Thr
GGT
[ENA]
¡û
>W1911581840
PGOI01000001
Alphaproteobacteria
Pseudorhodobacter sp. MZDSW-24AT [PGOI]
239009
239083
+
Thr
GGT
[ENA]
¡û
>W1911696574
QMEK01000006
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
65984
66058
+
Thr
GGT
[ENA]
¡û
>W1911698498
QNRC01000008
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
20919
20845
-
Thr
GGT
[ENA]
¡û
>W1911813265
QZEW01000153
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
6204
6130
-
Thr
GGT
[ENA]
¡û
>W1810173979
PJOM01000002
Alphaproteobacteria
Pseudotabrizicola formosa XJSP [PJOM]
200809
200735
-
Thr
GGT
[ENA]
¡û
>W1810235998
PPGA01000019
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
57361
57435
+
Thr
GGT
[ENA]
¡û
>W1810324319
PUDR01000002
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
204623
204549
-
Thr
GGT
[ENA]
¡û
>W1810444993
PZKF01000013
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
1570
1496
-
Thr
GGT
[ENA]
¡û
>W1810585323
QFCQ01000067
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
3028
2954
-
Thr
GGT
[ENA]
¡û
>W1810697122
QLUV01000006
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
5073
4999
-
Thr
GGT
[ENA]
¡û
>W1810707376
QNHG01000001
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
690776
690702
-
Thr
GGT
[ENA]
¡û
>W1810759464
QPJL01000001
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
59763
59689
-
Thr
GGT
[ENA]
¡û
>W1810785168
QRBG01000002
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
302517
302443
-
Thr
GGT
[ENA]
¡û
>W1810917917
QWEY01000005
Alphaproteobacteria
Pseudotabrizicola alkalilacus DJC [QWEY]
90277
90203
-
Thr
GGT
[ENA]
¡û
>C11117029
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
447577
447651
+
Thr
GGT
[Ensembl]
¡û
>W1511348552
JRKN01000008
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
68159
68085
-
Thr
GGT
[ENA]
¡û
>W1511348667
JRKP01000092
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
9227
9153
-
Thr
GGT
[ENA]
¡û
>W1511348714
JRKQ01000162
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
4238
4164
-
Thr
GGT
[ENA]
¡û
>W1511348758
JRKR01000139
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
4137
4063
-
Thr
GGT
[ENA]
¡û
>W1511348787
JRKS01000016
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
8848
8774
-
Thr
GGT
[ENA]
¡û
>W1511348836
JRKT01000047
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
16903
16829
-
Thr
GGT
[ENA]
¡û
>W121060021
AJFB01002776
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
356
282
-
Thr
GGT
[ENA]
¡û
>W1610049820
BBFH01000057
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
7114
7040
-
Thr
GGT
[ENA]
¡û
>W1610750141
LNBC01000034
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
6889
6815
-
Thr
GGT
[ENA]
¡û
>WENV078292
AAFZ01021927
Fossil microbial community from Whale Fall (Santa Cruz Basin)
413
487
+
Thr
GGT
[ENA]
>W1710015487
AQQS01000015
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
35744
35818
+
Thr
GGT
[ENA]
¡û
>W1710046219
BBFH01000057
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
7114
7040
-
Thr
GGT
[ENA]
¡û
>W1710518455
FNEA01000004
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
9267
9193
-
Thr
GGT
[ENA]
¡û
>W1710528193
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
184108
184182
+
Thr
GGT
[ENA]
¡û
>W1710535268
FNSK01000001
Alphaproteobacteria
Rhodobacter sp. 24-YEA-8 [FNSK]
771134
771060
-
Thr
GGT
[ENA]
¡û
>W1710547715
FODE01000090
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
6557
6483
-
Thr
GGT
[ENA]
¡û
>W1710555533
FOJO01000001
Alphaproteobacteria
Paracoccus halophilus [FOJO]
321133
321059
-
Thr
GGT
[ENA]
¡û
>W1710574670
FOYK01000004
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
236863
236937
+
Thr
GGT
[ENA]
¡û
>W1710582186
FPKU01000003
Alphaproteobacteria
Devosia enhydra [FPKU]
420144
420218
+
Thr
GGT
[ENA]
¡û
>W1710592362
FRCK01000001
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
197692
197618
-
Thr
GGT
[ENA]
¡û
>W1710596175
FTMK01000002
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
273808
273882
+
Thr
GGT
[ENA]
¡û
>W1710599495
FTOT01000004
Alphaproteobacteria
Gemmobacter megaterium [FTOT]
46127
46201
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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