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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660968 (59 seq.)
>W1710925678
LODL01000019
Betaproteobacteria
Dechloromonas denitrificans [LODL]
5564
5638
+
Val
CAC
[ENA]
¡û
>W1711340000
MCAW01000011
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
62260
62334
+
Val
CAC
[ENA]
¡û
>W131052691
AMZF01000037
Betaproteobacteria
Pusillimonas noertemannii BS8 [AMZF]
37892
37966
+
Val
CAC
[ENA]
¡û
>W131223559
AUCE01000003
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
6249
6323
+
Val
CAC
[ENA]
¡û
>W131223607
AUCE01000018
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
330
256
-
Val
CAC
[ENA]
¡û
>W131223608
AUCE01000019
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
212
286
+
Val
CAC
[ENA]
¡û
>W1711582069
MNUX01000072
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_325 [MNUX]
11334
11408
+
Val
CAC
[ENA]
¡û
>W1712102746
NINW01000028
Betaproteobacteria
Pigmentiphaga sp. NML080357 [NINW]
69611
69685
+
Val
CAC
[ENA]
¡û
>W1712102785
NINX01000024
Betaproteobacteria
Pigmentiphaga sp. NML030171 [NINX]
274741
274667
-
Val
CAC
[ENA]
¡û
>W1712110536
NJIH01000008
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
216671
216745
+
Val
CAC
[ENA]
¡û
>C171115798
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
3888888
3888814
-
Val
CAC
-
¡û
>C171115845
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
3771123
3771049
-
Val
CAC
-
¡û
>WENV180038414
FZPV01000003
[FZPV] metagenome; underground water
20563
20489
-
Val
CAC
[ENA]
¢þ
>WENV180342169
OBLJ01000199
[OBLJ] soil metagenome; Clay
2337
2411
+
Val
CAC
[ENA]
¢þ
>WENV181231595
OFEK01040358
[OFEK] activated sludge metagenome; Anaerobic digester
369
443
+
Val
CAC
[ENA]
¢þ
>WENV181291922
OFHD01009975
[OFHD] soil metagenome; Clay
386
312
-
Val
CAC
[ENA]
¢þ
>WENV181292607
OFHF01001477
[OFHF] soil metagenome; Clay
1333
1407
+
Val
CAC
[ENA]
¢þ
>WENV181293071
OFHG01000001
[OFHG] soil metagenome; Clay
258843
258769
-
Val
CAC
[ENA]
¢þ
>WENV181296881
OFHK01001596
[OFHK] soil metagenome; Clay
5275
5201
-
Val
CAC
[ENA]
¢þ
>WENV181308034
OFIS01000121
[OFIS] sludge metagenome; sludge
38209
38283
+
Val
CAC
[ENA]
¢þ
>WENV181311294
OFJB01000594
[OFJB] sludge metagenome; sludge
1635
1709
+
Val
CAC
[ENA]
¢þ
>WENV181311596
OFJB01005232
[OFJB] sludge metagenome; sludge
3923
3997
+
Val
CAC
[ENA]
¢þ
>WENV181401374
OFTX01000060
[OFTX] sludge metagenome; sludge
26568
26494
-
Val
CAC
[ENA]
¢þ
>WENV181402388
OFTY01001023
[OFTY] sludge metagenome; sludge
1716
1790
+
Val
CAC
[ENA]
¢þ
>W141139304
AWNL01000040
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
123493
123567
+
Val
CAC
[ENA]
¡û
>WENV181415594
OGCL01015969
[OGCL] hot springs metagenome; Hot spring water
720
646
-
Val
CAC
[ENA]
¢þ
>WENV183727805
PJTP01000542
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
4091
4165
+
Val
CAC
[ENA]
¢þ
>WENV183727882
PJTP01002993
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
868
794
-
Val
CAC
[ENA]
¢þ
>WENV183739306
PJUE01007077
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
622
696
+
Val
CAC
[ENA]
¢þ
>WENV183739546
PJUE01030862
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
417
343
-
Val
CAC
[ENA]
¢þ
>WENV183740195
PJUF01000692
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
16564
16638
+
Val
CAC
[ENA]
¢þ
>WENV183740877
PJUF01014440
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1091
1017
-
Val
CAC
[ENA]
¢þ
>WENV170000153
AERA01017695
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
647
721
+
Val
CAC
[ENA]
¢þ
>WENV170010995
APMI01038429
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1621
1695
+
Val
CAC
[ENA]
¢þ
>WENV170691174
LFRM01383326
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
105
179
+
Val
CAC
[ENA]
¢þ
>C181034351
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
3643481
3643407
-
Val
CAC
-
¡û
>C181227119
LT907988
Betaproteobacteria
Orrella dioscoreae [LT907988]
3751735
3751661
-
Val
CAC
-
¡û
>C191012240
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3812569
3812495
-
Val
CAC
-
¡û
>C191023138
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
2191151
2191077
-
Val
CAC
-
¡û
>W1910891089
NEVS01000004
Betaproteobacteria
Bordetella genomosp. 11 11 AU8856 [NEVS]
3793799
3793725
-
Val
CAC
[ENA]
¡û
>W1911641150
PYAL01000008
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
95528
95454
-
Val
CAC
[ENA]
¡û
>W1810063582
PDUW01000005
Betaproteobacteria
Pusillimonas caeni KCTC 42353 [PDUW]
94611
94537
-
Val
CAC
[ENA]
¡û
>W1810063606
PDUX01000001
Betaproteobacteria
Pusillimonas noertemannii DSM 10065 [PDUX]
787346
787272
-
Val
CAC
[ENA]
¡û
>W1810573171
QEKO01000001
Betaproteobacteria
Pusillimonas noertemannii DSM 10065 [QEKO]
680520
680594
+
Val
CAC
[ENA]
¡û
>W1810720998
QNRQ01000004
Betaproteobacteria
Eoetvoesiella caeni DSM 25520 [QNRQ]
68267
68193
-
Val
CAC
[ENA]
¡û
>C151101343
HG916765
Betaproteobacteria
Castellaniella defragrans 65Phen [HG916765]
3789393
3789319
-
Val
CAC
[Ensembl]
¡û
>WENV11100511
AERA01017695
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
647
721
+
Val
CAC
[ENA]
¡û
>W1511310841
JPQP01000019
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
337378
337452
+
Val
CAC
[ENA]
¡û
>C11118204
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
3768231
3768305
+
Val
CAC
[Ensembl]
¡û
>C161094171
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
5039609
5039535
-
Val
CAC
-
¡û
>C161094218
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
5121310
5121236
-
Val
CAC
[Ensembl]
¡û
>C161109105
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
643777
643703
-
Val
CAC
[Ensembl]
¡û
>W1610447551
FKBR01000033
Betaproteobacteria
Bordetella trematum [FKBR]
247861
247935
+
Val
CAC
[ENA]
¡û
>W1610447629
FKBT01000014
Betaproteobacteria
Bordetella trematum [FKBT]
249228
249302
+
Val
CAC
[ENA]
¡û
>W1610506780
FLRC01000006
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
24010
24084
+
Val
CAC
[ENA]
¡û
>W1610783324
LODL01000019
Betaproteobacteria
Dechloromonas denitrificans [LODL]
5564
5638
+
Val
CAC
[ENA]
¡û
>W1710447179
FKBR01000033
Betaproteobacteria
Bordetella trematum [FKBR]
247861
247935
+
Val
CAC
[ENA]
¡û
>W1710447257
FKBT01000014
Betaproteobacteria
Bordetella trematum [FKBT]
249228
249302
+
Val
CAC
[ENA]
¡û
>W1710499001
FLRC01000006
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
24010
24084
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK