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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660987 (37 seq.)
>W131110230
APJM01000011
Actinomycetota
Leucobacter sp. UCD-THU [APJM]
401373
401445
+
Thr
GGT
[ENA]
¡û
>W131179558
ARMM01000008
Actinomycetota
Gulosibacter faecalis ATCC 13722 [ARMM]
139906
139832
-
Thr
GGT
[ENA]
¡û
>W131218525
ATXU01000009
Actinomycetota
Leucobacter chironomi DSM 19883 [ATXU]
33322
33394
+
Thr
GGT
[ENA]
¡û
>W131225835
AUDX01000022
Actinomycetota
Gulosibacter molinativorax DSM 13485 [AUDX]
415
489
+
Thr
GGT
[ENA]
¡û
>WENV170011188
APMI01048590
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1771
1843
+
Thr
GGT
[ENA]
¢þ
>C191134146
CP035037
Actinomycetota
Leucobacter muris DSM 101948 [CP035037]
226079
226151
+
Thr
GGT
-
¡û
>C191146778
CP035806
Actinomycetota
Leucobacter triazinivorans JW-1 [CP035806]
2353240
2353168
-
Thr
GGT
-
¡û
>C191178336
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
1211885
1211813
-
Thr
GGT
-
¡û
>C191178375
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
1190869
1190797
-
Thr
GGT
-
¡û
>C191178413
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
1160277
1160205
-
Thr
GGT
-
¡û
>W141766596
JOEB01000005
Actinomycetota
Mycetocola saprophilus [JOEB]
170195
170267
+
Thr
GGT
[ENA]
¡û
>W141766651
JOEC01000004
Actinomycetota
Mycetocola saprophilus [JOEC]
170209
170281
+
Thr
GGT
[ENA]
¡û
>W1910374233
FUIC01000011
Actinomycetota
Gulosibacter sp. 10 [FUIC]
178392
178464
+
Thr
GGT
[ENA]
¡û
>W1910377796
FUKR01000056
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
6754
6826
+
Thr
GGT
[ENA]
¡û
>W1910782949
MPIM01000029
Actinomycetota
Leucobacter sp. OLCALW19 [MPIM]
114138
114066
-
Thr
GGT
[ENA]
¡û
>W1910792224
MRAQ01000067
Actinomycetota
Leucobacter sp. OLTLW20 [MRAQ]
135348
135276
-
Thr
GGT
[ENA]
¡û
>W1910792260
MRAR01000003
Actinomycetota
Leucobacter sp. OLAS13 [MRAR]
13994
14066
+
Thr
GGT
[ENA]
¡û
>W1910792305
MRAS01000004
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
13786
13858
+
Thr
GGT
[ENA]
¡û
>W1910792369
MRAT01000016
Actinomycetota
Leucobacter sp. OLDS2 [MRAT]
155221
155149
-
Thr
GGT
[ENA]
¡û
>W1910792394
MRAU01000005
Actinomycetota
Leucobacter sp. OLES1 [MRAU]
1787
1715
-
Thr
GGT
[ENA]
¡û
>W1910792452
MRAV01000011
Actinomycetota
Leucobacter sp. OLIS6 [MRAV]
351047
351119
+
Thr
GGT
[ENA]
¡û
>W1910792509
MRAW01000052
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
17704
17632
-
Thr
GGT
[ENA]
¡û
>W1910804064
MTCJ01000065
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
13804
13876
+
Thr
GGT
[ENA]
¡û
>W1910804108
MTCK01000098
Actinomycetota
Leucobacter sp. OAMSW11 [MTCK]
155186
155114
-
Thr
GGT
[ENA]
¡û
>W1910831770
MWZD01000017
Actinomycetota
Leucobacter massiliensis 122RC15 [MWZD]
440974
440902
-
Thr
GGT
[ENA]
¡û
>W1810387067
PXVE01000020
Actinomycetota
Gulosibacter molinativorax ON4 [PXVE]
82
156
+
Thr
GGT
[ENA]
¡û
>W1810917667
QWBV01000020
Actinomycetota
Leucobacter sp. wl10 [QWBV]
70311
70239
-
Thr
GGT
[ENA]
¡û
>C151025269
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
221766
221838
+
Thr
GGT
[Ensembl]
¡û
>W1511008725
JHBW01000069
Actinomycetota
Leucobacter musarum CBX152 [JHBW]
157473
157401
-
Thr
GGT
[ENA]
¡û
>W1511008789
JHBX01000141
Actinomycetota
Leucobacter japonicus CBX130 [JHBX]
108879
108951
+
Thr
GGT
[ENA]
¡û
>W1511013971
JHEI01000144
Actinomycetota
Leucobacter celer CBX151 [JHEI]
19525
19453
-
Thr
GGT
[ENA]
¡û
>W1511585436
LAYO01000093
Actinomycetota
Leucobacter sp. Ag1 [LAYO]
60685
60613
-
Thr
GGT
[ENA]
¡û
>W1610069594
BCSP01000008
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
24560
24486
-
Thr
GGT
[ENA]
¡û
>W1610590391
LDRK01000054
Actinomycetota
Leucobacter chromiiresistens [LDRK]
23082
23154
+
Thr
GGT
[ENA]
¡û
>W1710066967
BCSP01000008
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
24560
24486
-
Thr
GGT
[ENA]
¡û
>W1710526114
FNKB01000001
Actinomycetota
Leucobacter chromiiresistens [FNKB]
1140581
1140653
+
Thr
GGT
[ENA]
¡û
>W1710709671
LDRK01000054
Actinomycetota
Leucobacter chromiiresistens [LDRK]
23082
23154
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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