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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.661024 (59 seq.)
>W1710852978
LLWF02000001
Alphaproteobacteria
Roseomonas mucosa [LLWF]
110134
110060
-
Gly
CCC
[ENA]
¡û
>W1710893521
LNEV01000012
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
69288
69362
+
Gly
CCC
[ENA]
¡û
>W1711407964
MGLI01000148
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
4737
4663
-
Gly
CCC
[ENA]
¡û
>W1711408020
MGLN01000176
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
10070
9996
-
Gly
CCC
[ENA]
¡û
>W1711961713
NCSQ01000129
Alphaproteobacteria
Aquidulcibacter paucihalophilus TH1-2 [NCSQ]
5543
5617
+
Gly
CCC
[ENA]
¡û
>C171039581
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1101178
1101104
-
Gly
CCC
-
¡û
>W131166818
ARCT01000002
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
379514
379588
+
Gly
CCC
[ENA]
¡û
>W131225067
AUDH01000001
Alphaproteobacteria
Rubritepida flocculans DSM 14296 [AUDH]
428437
428363
-
Gly
CCC
[ENA]
¡û
>WENV180016291
FSUP01000420
[FSUP] metagenome; soil
3658
3732
+
Gly
CCC
[ENA]
¢þ
>WENV180018803
FTAI01001793
[FTAI] metagenome; soil
9230
9156
-
Gly
CCC
[ENA]
¢þ
>WENV180691517
OCZS010144309
[OCZS] soil metagenome; soil
90
16
-
Gly
CCC
[ENA]
¢þ
>WENV181223351
OFDC01008305
[OFDC] hot springs metagenome; Water
2093
2019
-
Gly
CCC
[ENA]
¢þ
>WENV181227571
OFDN01018522
[OFDN] hot springs metagenome; Water
2093
2019
-
Gly
CCC
[ENA]
¢þ
>W08010851
ABRU01000057
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
26144
26073
-
Gly
CCC
[ENA]
¡û
>WENV181411618
OGCI01034659
[OGCI] hot springs metagenome; Hot spring water
820
894
+
Gly
CCC
[ENA]
¢þ
>W141188913
AYNA01000102
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
4659
4585
-
Gly
CCC
[ENA]
¡û
>W141220747
AZYE01000026
Alphaproteobacteria
Microvirga lupini [AZYE]
16042
15968
-
Gly
CCC
[ENA]
¡û
>W141276614
JADY01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
565105
565179
+
Gly
CCC
[ENA]
¡û
>W141276735
JAEA01000010
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
215075
215149
+
Gly
CCC
[ENA]
¡û
>WENV183664679
ORJL010398953
[ORJL] groundwater metagenome; groundwater
4754
4828
+
Gly
CCC
[ENA]
¢þ
>WENV183674455
ORJL011391172
[ORJL] groundwater metagenome; groundwater
3
77
+
Gly
CCC
[ENA]
¢þ
>WENV183810769
PVBE011513319
[PVBE] marine metagenome; water
205
279
+
Gly
CCC
[ENA]
¢þ
>WENV170709479
LNFM01000379
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
69284
69358
+
Gly
CCC
[ENA]
¢þ
>WENV170709944
LNFM01000958
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
75
1
-
Gly
CCC
[ENA]
¢þ
>WENV170711595
LNFM01005956
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20500
20426
-
Gly
CCC
[ENA]
¢þ
>WENV170714399
LNFM01071520
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1978
1904
-
Gly
CCC
[ENA]
¢þ
>WENV170715032
LNFM01127013
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20
94
+
Gly
CCC
[ENA]
¢þ
>WENV170842883
MDSZ01249241
[MDSZ] marine metagenome; seawater
1182
1108
-
Gly
CCC
[ENA]
¢þ
>C181102022
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
1661462
1661536
+
Gly
CCC
-
¡û
>C191118885
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
1214065
1214139
+
Gly
CCC
-
¡û
>W141558714
JHWD01000004
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
146574
146648
+
Gly
CCC
[ENA]
¡û
>W141712439
JMQR01000026
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
9569
9495
-
Gly
CCC
[ENA]
¡û
>W141779220
JONP01000022
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
84038
84112
+
Gly
CCC
[ENA]
¡û
>W141810186
JPUG01000049
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
1013
939
-
Gly
CCC
[ENA]
¡û
>W141816687
JQKB01000013
Alphaproteobacteria
Belnapia moabensis DSM 16746 [JQKB]
26305
26379
+
Gly
CCC
[ENA]
¡û
>W141821089
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1972614
1972540
-
Gly
CCC
[ENA]
¡û
>W1910725291
MGLL01000160
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
8378
8452
+
Gly
CCC
[ENA]
¡û
>W1911653538
QDFX01000023
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
38969
39043
+
Gly
CCC
[ENA]
¡û
>W1911747252
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
2604736
2604662
-
Gly
CCC
[ENA]
¡û
>W1810005669
BFBR01000001
Alphaproteobacteria
Candidatus Phycosocius bacilliformis bacilliformis BOTRYCO-2 [BFBR]
57384
57310
-
Gly
CCC
[ENA]
¡û
>W1810325513
PUEJ01000009
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
284582
284508
-
Gly
CCC
[ENA]
¡û
>W1810397223
PYDU01000041
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
11270
11344
+
Gly
CCC
[ENA]
¡û
>W1810534727
QDAH01000017
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
26939
26865
-
Gly
CCC
[ENA]
¡û
>W1810605118
QGNA01000001
Alphaproteobacteria
Falsiroseomonas bella CQN31 [QGNA]
431472
431546
+
Gly
CCC
[ENA]
¡û
>W1810692329
QLIX01000005
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
260061
259987
-
Gly
CCC
[ENA]
¡û
>W1510639815
CVJQ01000001
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
983768
983842
+
Gly
CCC
[ENA]
¡û
>W1511352870
JROR01000003
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
189179
189105
-
Gly
CCC
[ENA]
¡û
>C161040211
CP012156
Alphaproteobacteria
Hyphomonadaceae bacterium UKL13-1 [CP012156]
2548748
2548674
-
Gly
CCC
-
¡û
>C161047031
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
1091120
1091194
+
Gly
CCC
[Ensembl]
¡û
>W121068035
AJUA01000073
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
226853
226927
+
Gly
CCC
[ENA]
¡û
>W121113845
ALOX01000040
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
28697
28623
-
Gly
CCC
[ENA]
¡û
>C131019896
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
21858
21932
+
Gly
CCC
[Ensembl]
¡û
>W1610716132
LLWF01000090
Alphaproteobacteria
Roseomonas mucosa [LLWF]
21390
21316
-
Gly
CCC
[ENA]
¡û
>W1610753787
LNEV01000012
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
69288
69362
+
Gly
CCC
[ENA]
¡û
>W1710084281
BDLP01000123
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
4650
4576
-
Gly
CCC
[ENA]
¡û
>W1710507595
FMVJ01000020
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
1042
968
-
Gly
CCC
[ENA]
¡û
>W1710513118
FMZX01000019
Alphaproteobacteria
Belnapia rosea [FMZX]
58373
58447
+
Gly
CCC
[ENA]
¡û
>W1710567289
FOSQ01000001
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
873192
873266
+
Gly
CCC
[ENA]
¡û
>W1710588266
FQZF01000002
Alphaproteobacteria
Roseomonas rosea [FQZF]
337489
337563
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK