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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.661153 (22 seq.)
>W1710893995
LNFH01000273
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
21051
21125
+
Asn
GTT
[ENA]
¡û
>W1711738571
MUBG01000001
Alphaproteobacteria
Bartonella sp. WD12.1 [MUBG]
916502
916576
+
Asn
GTT
[ENA]
¡û
>C171099710
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
388036
387962
-
Asn
GTT
-
¡û
>C171099727
CP019781
Alphaproteobacteria
Bartonella sp. WD16.2 [CP019781]
957672
957746
+
Asn
GTT
-
¡û
>C171099794
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
443017
442943
-
Asn
GTT
-
¡û
>C171099810
CP019787
Alphaproteobacteria
Bartonella sp. JB15 [CP019787]
880403
880477
+
Asn
GTT
-
¡û
>C171099850
CP019788
Alphaproteobacteria
Bartonella sp. JB63 [CP019788]
880450
880524
+
Asn
GTT
-
¡û
>WENV180034295
FTKP01146170
[FTKP] metagenome; soil
1
75
+
Asn
GTT
[ENA]
¢þ
>W141006720
AGWA01000006
Alphaproteobacteria
Bartonella bovis Apr-91 [AGWA]
692188
692262
+
Asn
GTT
[ENA]
¡û
>W141006760
AGWB01000003
Alphaproteobacteria
Bartonella bovis m02 [AGWB]
738143
738217
+
Asn
GTT
[ENA]
¡û
>W141006801
AGWC01000004
Alphaproteobacteria
Bartonella schoenbuchensis m07a [AGWC]
698706
698780
+
Asn
GTT
[ENA]
¡û
>W141010012
AHPK01000002
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
315796
315870
+
Asn
GTT
[ENA]
¡û
>WENV180693464
OCZS011260599
[OCZS] soil metagenome; soil
122
196
+
Asn
GTT
[ENA]
¢þ
>WENV181292900
OFHF01039524
[OFHF] soil metagenome; Clay
539
613
+
Asn
GTT
[ENA]
¢þ
>WENV170710152
LNFM01001217
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1623
1549
-
Asn
GTT
[ENA]
¢þ
>C181037943
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
451002
450928
-
Asn
GTT
-
¡û
>C181158525
CP027668
Alphaproteobacteria
Phreatobacter cathodiphilus S-12 [CP027668]
1696684
1696758
+
Asn
GTT
-
¡û
>W1910828864
MWVG01000013
Alphaproteobacteria
Bartonella bovis BbUM [MWVG]
15095
15169
+
Asn
GTT
[ENA]
¡û
>W1911802559
QYUK01000011
Alphaproteobacteria
Oleomonas cavernae K1W22B-8 [QYUK]
1735972
1736046
+
Asn
GTT
[ENA]
¡û
>W1810463315
PZZL01000004
Alphaproteobacteria
Phreatobacter oligotrophus DSM 25521 [PZZL]
232552
232626
+
Asn
GTT
[ENA]
¡û
>W121059357
AIMA01000013
Alphaproteobacteria
Bartonella melophagi K-2C [AIMA]
20982
20908
-
Asn
GTT
[ENA]
¡û
>W1610754261
LNFH01000273
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
21051
21125
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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