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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.662490 (92 seq.)
>W1711043898
LRMP01000004
Actinomycetota
Brachybacterium sp. sponge [LRMP]
515501
515427
-
Val
GAC
[ENA]
¡û
>W1711186254
LWOB01000252
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
842
916
+
Val
GAC
[ENA]
¡û
>W1711664137
MQVR01000005
Actinomycetota
Bowdeniella nasicola [MQVR]
34295
34369
+
Val
GAC
[ENA]
¡û
>W1711774063
MVIV01000004
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
80740
80668
-
Val
GAC
[ENA]
¡û
>W1711774086
MVIV01000012
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
22640
22712
+
Val
GAC
[ENA]
¡û
>W1711774095
MVIW01000001
Actinomycetota
Actinomyces denticolens [MVIW]
76127
76055
-
Val
GAC
[ENA]
¡û
>W1711774126
MVIW01000017
Actinomycetota
Actinomyces denticolens [MVIW]
35588
35516
-
Val
GAC
[ENA]
¡û
>C171060451
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
318294
318368
+
Val
GAC
-
¡û
>C171060493
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
317462
317388
-
Val
GAC
-
¡û
>C171073452
CP018135
Actinomycetota
Neomicrococcus aestuarii B18 [CP018135]
193573
193499
-
Val
GAC
-
¡û
>C171108529
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
992593
992665
+
Val
GAC
-
¡û
>W131161285
AQXM01000060
Actinomycetota
Acaricomes phytoseiuli DSM 14247 [AQXM]
23882
23808
-
Val
GAC
[ENA]
¡û
>W131191133
ASHR01000001
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
94463
94389
-
Val
GAC
[ENA]
¡û
>W131217102
ATWL01000001
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
89447
89521
+
Val
GAC
[ENA]
¡û
>W131221357
AUAK01000002
Actinomycetota
Actinomyces slackii ATCC 49928 [AUAK]
177857
177783
-
Val
GAC
[ENA]
¡û
>W131221390
AUAK01000028
Actinomycetota
Actinomyces slackii ATCC 49928 [AUAK]
38598
38672
+
Val
GAC
[ENA]
¡û
>W131234905
AULD01000016
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
2267
2341
+
Val
GAC
[ENA]
¡û
>W131236630
AUMN01000002
Actinomycetota
Arthrobacter castelli DSM 16402 [AUMN]
368224
368298
+
Val
GAC
[ENA]
¡û
>WENV180103115
OAPA01002296
[OAPA] marine metagenome; ENVO:00002010
1034
962
-
Val
GAC
[ENA]
¢þ
>WENV180104096
OAPB01080377
[OAPB] marine metagenome; Sterile flask
112
186
+
Val
GAC
[ENA]
¢þ
>WENV180114476
OAPS01011269
[OAPS] marine metagenome; sea water
463
389
-
Val
GAC
[ENA]
¢þ
>WENV180209193
OBAK01034933
[OBAK] marine metagenome; ENVO.00002150
388
459
+
Val
GAC
[ENA]
¢þ
>W141024114
AKGF01000025
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
125838
125910
+
Val
GAC
[ENA]
¡û
>W141024119
AKGF01000029
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
40602
40530
-
Val
GAC
[ENA]
¡û
>WENV180369334
OBOG01078947
[OBOG] marine metagenome; seawater
196
269
+
Val
GAC
[ENA]
¢þ
>WENV180391877
OBPN01080707
[OBPN] marine metagenome; seawater
194
268
+
Val
GAC
[ENA]
¢þ
>WENV180399009
OBQE01013988
[OBQE] marine metagenome; ENVO.00002150
13
85
+
Val
GAC
[ENA]
¢þ
>WENV019094
AACY020525661
Marine microbial communities from Global Ocean Sampling (GOS)
1281
1355
+
Val
GAC
[ENA]
>WENV019246
AACY020528579
Marine microbial communities from Global Ocean Sampling (GOS)
3247
3173
-
Val
GAC
[ENA]
>WENV019332
AACY020530257
Marine microbial communities from Global Ocean Sampling (GOS)
888
814
-
Val
GAC
[ENA]
>WENV019349
AACY020530598
Marine microbial communities from Global Ocean Sampling (GOS)
2280
2354
+
Val
GAC
[ENA]
>WENV019618
AACY020535659
Marine microbial communities from Global Ocean Sampling (GOS)
1874
1948
+
Val
GAC
[ENA]
>WENV019749
AACY020538240
Marine microbial communities from Global Ocean Sampling (GOS)
1576
1650
+
Val
GAC
[ENA]
>WENV183712138
PDWI01090171
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1860
1932
+
Val
GAC
[ENA]
¢þ
>W09108359
ABTF01000001
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
37156
37230
+
Val
GAC
[ENA]
¡û
>W09108377
ABTF01000001
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
36173
36099
-
Val
GAC
[ENA]
¡û
>WENV170922882
MDTG01039477
[MDTG] marine metagenome; seawater
100
172
+
Val
GAC
[ENA]
¢þ
>C181003380
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
1375090
1375162
+
Val
GAC
-
¡û
>C181003409
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
1632512
1632440
-
Val
GAC
-
¡û
>C181143735
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
1119061
1119135
+
Val
GAC
-
¡û
>C181199699
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
940244
940318
+
Val
GAC
-
¡û
>C181199735
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
939422
939348
-
Val
GAC
-
¡û
>C191030329
CP025227
Actinomycetota
Actinomyces wuliandei 299 [CP025227]
1399541
1399615
+
Val
GAC
-
¡û
>C191030349
CP025227
Actinomycetota
Actinomyces wuliandei 299 [CP025227]
1585463
1585391
-
Val
GAC
-
¡û
>C191127977
CP034593
Actinomycetota
Flaviflexus ciconiae H23T48 [CP034593]
641129
641203
+
Val
GAC
-
¡û
>C191208958
LR134363
Actinomycetota
Actinomyces slackii NCTC11923 [LR134363]
2447256
2447183
-
Val
GAC
-
¡û
>C191208962
LR134363
Actinomycetota
Actinomyces slackii NCTC11923 [LR134363]
2153806
2153732
-
Val
GAC
-
¡û
>WENV024313
AACY020796011
Marine microbial communities from Global Ocean Sampling (GOS)
158
232
+
Val
GAC
[ENA]
>W1910231915
FPEG01000002
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
529589
529515
-
Val
GAC
[ENA]
¡û
>W1910341019
FTPB01000004
Actinomycetota
Actinomyces mediterranea Marseille-P3257 [FTPB]
309581
309653
+
Val
GAC
[ENA]
¡û
>W1910442538
FWFH01000152
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
254662
254735
+
Val
GAC
[ENA]
¡û
>W1910442542
FWFH01000152
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
253679
253606
-
Val
GAC
[ENA]
¡û
>W1911693695
QLVF01000119
Actinomycetota
Aeromicrobium lacus CPCC 204604 [QLVF]
1631
1705
+
Val
GAC
[ENA]
¡û
>W1911702250
QOCI01000018
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
32054
32127
+
Val
GAC
[ENA]
¡û
>W1911726665
QSWH01000006
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
28446
28520
+
Val
GAC
[ENA]
¡û
>W1911726669
QSWH01000006
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
27624
27550
-
Val
GAC
[ENA]
¡û
>W1911765346
QXCP01000005
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
29506
29580
+
Val
GAC
[ENA]
¡û
>W1911765354
QXCP01000005
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
28846
28772
-
Val
GAC
[ENA]
¡û
>W1911768072
QXFN01000004
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
568133
568207
+
Val
GAC
[ENA]
¡û
>W1911798511
QYRR01000001
Actinomycetota
Actinomyces sp. 2119 [QYRR]
104116
104188
+
Val
GAC
[ENA]
¡û
>W1911798517
QYRR01000001
Actinomycetota
Actinomyces sp. 2119 [QYRR]
293183
293109
-
Val
GAC
[ENA]
¡û
>W1810167507
PJIN01000010
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
80396
80468
+
Val
GAC
[ENA]
¡û
>W1810167509
PJIN01000010
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
80664
80736
+
Val
GAC
[ENA]
¡û
>W1810196901
PNFB01000021
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
36568
36642
+
Val
GAC
[ENA]
¡û
>W1810196903
PNFB01000021
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
35809
35735
-
Val
GAC
[ENA]
¡û
>W1810675423
QKKY01000119
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
1631
1705
+
Val
GAC
[ENA]
¡û
>WENV028430
AACY021120992
Marine microbial communities from Global Ocean Sampling (GOS)
759
833
+
Val
GAC
[ENA]
>WENV030334
AACY021274515
Marine microbial communities from Global Ocean Sampling (GOS)
466
540
+
Val
GAC
[ENA]
>WENV035615
AACY021710720
Marine microbial communities from Global Ocean Sampling (GOS)
538
464
-
Val
GAC
[ENA]
>C10101550
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
1564302
1564376
+
Val
GAC
[Ensembl]
¡û
>C10101583
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
1563319
1563245
-
Val
GAC
[Ensembl]
¡û
>W1510544478
CSSZ01000008
Actinomycetota
Flaviflexus massiliensis SIT4 [CSSZ]
1536031
1536105
+
Val
GAC
[ENA]
¡û
>WENV040520
AACY022089965
Marine microbial communities from Global Ocean Sampling (GOS)
271
345
+
Val
GAC
[ENA]
>C11114913
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
2507226
2507152
-
Val
GAC
[Ensembl]
¡û
>WENV045483
AACY022521471
Marine microbial communities from Global Ocean Sampling (GOS)
220
294
+
Val
GAC
[ENA]
>W11177852
AGBX01000006
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
332677
332751
+
Val
GAC
[ENA]
¡û
>W11177854
AGBX01000006
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
331984
331910
-
Val
GAC
[ENA]
¡û
>C161052860
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3063457
3063383
-
Val
GAC
[Ensembl]
¡û
>C161052862
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3063187
3063113
-
Val
GAC
[Ensembl]
¡û
>W121018136
AGSO01000015
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
49030
48956
-
Val
GAC
[ENA]
¡û
>WENV070201
AACY023801046
Marine microbial communities from Global Ocean Sampling (GOS)
1348
1274
-
Val
GAC
[ENA]
>WENV070453
AACY023809570
Marine microbial communities from Global Ocean Sampling (GOS)
140
66
-
Val
GAC
[ENA]
>WENV070712
AACY023819872
Marine microbial communities from Global Ocean Sampling (GOS)
265
339
+
Val
GAC
[ENA]
>WENV071226
AACY023839962
Marine microbial communities from Global Ocean Sampling (GOS)
1207
1133
-
Val
GAC
[ENA]
>WENV071407
AACY023846489
Marine microbial communities from Global Ocean Sampling (GOS)
1144
1070
-
Val
GAC
[ENA]
>W1610885197
LRMP01000004
Actinomycetota
Brachybacterium sp. sponge [LRMP]
515501
515427
-
Val
GAC
[ENA]
¡û
>W1710082838
BDIO01000007
Actinomycetota
Actinomyces denticolens [BDIO]
122040
122112
+
Val
GAC
[ENA]
¡û
>W1710082843
BDIO01000007
Actinomycetota
Actinomyces denticolens [BDIO]
379430
379358
-
Val
GAC
[ENA]
¡û
>W1710533053
FNQV01000002
Actinomycetota
Bowdeniella nasicola [FNQV]
195521
195595
+
Val
GAC
[ENA]
¡û
>W1710575860
FOZN01000004
Actinomycetota
Agrococcus baldri [FOZN]
407812
407738
-
Val
GAC
[ENA]
¡û
>W1710587367
FQYL01000003
Actinomycetota
Actinomyces denticolens [FQYL]
207086
207158
+
Val
GAC
[ENA]
¡û
>W1710587405
FQYL01000015
Actinomycetota
Actinomyces denticolens [FQYL]
25262
25334
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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