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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.663782 (21 seq.)
>C171115959
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
27933
27859
-
Gln
TTG
-
¡û
>WENV181168260
OEIU01232652
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
134
208
+
Gln
TTG
[ENA]
¢þ
>WENV183662046
ORJL010160380
[ORJL] groundwater metagenome; groundwater
82
8
-
Gln
TTG
[ENA]
¢þ
>WENV183664123
ORJL010345734
[ORJL] groundwater metagenome; groundwater
60
134
+
Gln
TTG
[ENA]
¢þ
>WENV183664126
ORJL010345833
[ORJL] groundwater metagenome; groundwater
360
286
-
Gln
TTG
[ENA]
¢þ
>WENV183674831
ORJL011436485
[ORJL] groundwater metagenome; groundwater
1721
1647
-
Gln
TTG
[ENA]
¢þ
>WENV183691203
ORMF011721942
[ORMF] groundwater metagenome; groundwater
387
461
+
Gln
TTG
[ENA]
¢þ
>WENV183692895
ORMF011989380
[ORMF] groundwater metagenome; groundwater
13
87
+
Gln
TTG
[ENA]
¢þ
>WENV183694425
ORMF012230909
[ORMF] groundwater metagenome; groundwater
2779
2853
+
Gln
TTG
[ENA]
¢þ
>WENV183695052
ORMF012327385
[ORMF] groundwater metagenome; groundwater
7695
7621
-
Gln
TTG
[ENA]
¢þ
>WENV170003639
AGTN01403158
[AGTN] bioreactor metagenome; poplar biomass
89
163
+
Gln
TTG
[ENA]
¢þ
>WENV170709184
LNFM01000166
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
158483
158409
-
Gln
TTG
[ENA]
¢þ
>C191005692
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2704828
2704754
-
Gln
TTG
-
¡û
>W1911148365
NPEU01000094
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
3622
3696
+
Gln
TTG
[ENA]
¡û
>W1911148482
NPEW01000374
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
849
775
-
Gln
TTG
[ENA]
¡û
>W1911148505
NPEX01000080
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
14374
14448
+
Gln
TTG
[ENA]
¡û
>ENV09003756
ADGO01168415
Compost metagenome contig00001
150
224
+
Gln
TTG
[ENA]
¡û
>C161001635
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
630917
630991
+
Gln
TTG
[Ensembl]
¡û
>C161048039
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
663643
663569
-
Gln
TTG
-
¡û
>C161108117
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
63617
63543
-
Gln
TTG
[Ensembl]
¡û
>W121103230
AKZI01000124
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
19009
18935
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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