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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664335 (38 seq.)
>W1711050787
LRRR01000005
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
109956
110030
+
Glu
TTC
[ENA]
¡û
>W1711050788
LRRR01000005
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
110222
110296
+
Glu
TTC
[ENA]
¡û
>W1711709214
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
847107
847033
-
Glu
TTC
[ENA]
¡û
>W1711709276
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
3870547
3870473
-
Glu
TTC
[ENA]
¡û
>C171035317
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
1607120
1607046
-
Glu
TTC
-
¡û
>C171105938
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
747381
747307
-
Glu
TTC
-
¡û
>W131223026
AUBS01000030
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
2188
2262
+
Glu
TTC
[ENA]
¡û
>W131223028
AUBS01000034
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
674
600
-
Glu
TTC
[ENA]
¡û
>W131241987
BASI01000001
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
167424
167498
+
Glu
TTC
[ENA]
¡û
>WENV181323830
OFKZ01010121
[OFKZ] marine metagenome; sea ice
465
391
-
Glu
TTC
[ENA]
¢þ
>W141199858
AYXI01000191
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
115
189
+
Glu
TTC
[ENA]
¡û
>WENV183615695
OOEB01095799
[OOEB] marine metagenome; sea ice
73
147
+
Glu
TTC
[ENA]
¢þ
>WENV170015946
AZIJ01005198
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
4447
4373
-
Glu
TTC
[ENA]
¢þ
>WENV170175752
CEOS01004330
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
147
73
-
Glu
TTC
[ENA]
¢þ
>WENV170191494
CEPD01026811
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
412
338
-
Glu
TTC
[ENA]
¢þ
>WENV170483111
CEVM01090598
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1263
1189
-
Glu
TTC
[ENA]
¢þ
>WENV170655411
JTFN01029858
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
334
260
-
Glu
TTC
[ENA]
¢þ
>WENV170655511
JTFN01040070
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
458
532
+
Glu
TTC
[ENA]
¢þ
>WENV170655582
JTFN01048231
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
24
98
+
Glu
TTC
[ENA]
¢þ
>WENV170655765
JTFN01070544
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
27
101
+
Glu
TTC
[ENA]
¢þ
>W1910549882
FZQB01000008
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
48214
48140
-
Glu
TTC
[ENA]
¡û
>W1911538661
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
805219
805145
-
Glu
TTC
[ENA]
¡û
>W1911597536
PNOS01000031
Alphaproteobacteria
Kandeliimicrobium roseum XY-R6 [PNOS]
4539
4613
+
Glu
TTC
[ENA]
¡û
>W1911747139
QWDA01000002
Alphaproteobacteria
Paracoccaceae bacterium IMCC 34051 [QWDA]
469097
469171
+
Glu
TTC
[ENA]
¡û
>W1911749913
QWJJ01000006
Alphaproteobacteria
Pseudooceanicola sediminis CY03 [QWJJ]
154750
154824
+
Glu
TTC
[ENA]
¡û
>W1810120363
PHSN01000033
Alphaproteobacteria
Acidimangrovimonas sediminis MS2-2 [PHSN]
9616
9690
+
Glu
TTC
[ENA]
¡û
>W1810583971
QEYD01000003
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
352473
352547
+
Glu
TTC
[ENA]
¡û
>W1810584047
QEYE01000038
Alphaproteobacteria
Maritimibacter sp. 55A14 [QEYE]
5205
5131
-
Glu
TTC
[ENA]
¡û
>W1810633779
QITQ01000007
Alphaproteobacteria
Roseovarius amoyensis GCL-8 [QITQ]
63814
63888
+
Glu
TTC
[ENA]
¡û
>W1810719933
QNQP01000008
Alphaproteobacteria
Roseovarius dicentrarchi YLY04 [QNQP]
2197
2123
-
Glu
TTC
[ENA]
¡û
>C161001485
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
448188
448114
-
Glu
TTC
[Ensembl]
¡û
>C161087705
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
173186
173260
+
Glu
TTC
-
¡û
>C161087754
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
167423
167497
+
Glu
TTC
[Ensembl]
¡û
>W1610891916
LRRR01000005
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
109956
110030
+
Glu
TTC
[ENA]
¡û
>W1610891917
LRRR01000005
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
110222
110296
+
Glu
TTC
[ENA]
¡û
>W1710529547
FNOB01000007
Alphaproteobacteria
Allgaiera indica [FNOB]
52213
52139
-
Glu
TTC
[ENA]
¡û
>W1710540946
FNXG01000002
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
853602
853528
-
Glu
TTC
[ENA]
¡û
>W1710592379
FRCK01000005
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
14487
14561
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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