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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664552 (33 seq.)
>W131158430
AQUB01000011
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
11443
11369
-
Val
TAC
[ENA]
¡û
>W131162562
AQYZ01000002
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
50437
50363
-
Val
TAC
[ENA]
¡û
>W131162924
AQZI01000001
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
133520
133594
+
Val
TAC
[ENA]
¡û
>WENV180102866
OAOZ01037190
[OAOZ] marine metagenome; ENVO:00002010
173
99
-
Val
TAC
[ENA]
¢þ
>WENV180110550
OAPN01000566
[OAPN] marine metagenome; 2011
78
4
-
Val
TAC
[ENA]
¢þ
>WENV180357315
OBNN01001821
[OBNN] marine metagenome; Coastal water
988
1062
+
Val
TAC
[ENA]
¢þ
>WENV180377077
OBON01000197
[OBON] marine metagenome; sea water
5065
4991
-
Val
TAC
[ENA]
¢þ
>WENV181368875
OFQN01002411
[OFQN] freshwater metagenome; Freshwater Lake
985
1057
+
Val
TAC
[ENA]
¢þ
>WENV181370321
OFQS01003523
[OFQS] freshwater metagenome; Freshwater Lake
382
456
+
Val
TAC
[ENA]
¢þ
>WENV181377181
OFRA01003635
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1619
1545
-
Val
TAC
[ENA]
¢þ
>WENV181377571
OFRA01018570
[OFRA] wastewater metagenome; Lake Maggiore Verbania
2
76
+
Val
TAC
[ENA]
¢þ
>WENV181379408
OFRD01001220
[OFRD] wastewater metagenome; Exp Tend CN 100WW
394
468
+
Val
TAC
[ENA]
¢þ
>WENV181384981
OFRI01024292
[OFRI] wastewater metagenome; Exp Tend VB 90WW
296
222
-
Val
TAC
[ENA]
¢þ
>WENV181386139
OFRL01000850
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
267
341
+
Val
TAC
[ENA]
¢þ
>WENV181387232
OFRL01066046
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
280
352
+
Val
TAC
[ENA]
¢þ
>WENV181400021
OFSF01000813
[OFSF] wastewater metagenome; Exp Tend VB 100WW
8575
8501
-
Val
TAC
[ENA]
¢þ
>WENV181400728
OFSF01021009
[OFSF] wastewater metagenome; Exp Tend VB 100WW
75
1
-
Val
TAC
[ENA]
¢þ
>WENV181851153
OGWE01010848
[OGWE] freshwater metagenome; freshwater
287
361
+
Val
TAC
[ENA]
¢þ
>WENV170572628
FLOH01001047
[FLOH] marine metagenome; water
28803
28877
+
Val
TAC
[ENA]
¢þ
>WENV170645539
JNSK01000087
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2871
2797
-
Val
TAC
[ENA]
¢þ
>C181018694
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
1396852
1396778
-
Val
TAC
-
¡û
>C181018737
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
1440944
1440870
-
Val
TAC
-
¡û
>C181020837
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
317797
317869
+
Val
TAC
-
¡û
>C181021098
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
324530
324604
+
Val
TAC
-
¡û
>C181021245
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
294008
294080
+
Val
TAC
-
¡û
>C181021331
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
1078257
1078183
-
Val
TAC
-
¡û
>C181021358
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
293659
293731
+
Val
TAC
-
¡û
>WENV022081
AACY020620649
Marine microbial communities from Global Ocean Sampling (GOS)
742
816
+
Val
TAC
[ENA]
>WENV057206
AACY023288373
Marine microbial communities from Global Ocean Sampling (GOS)
430
504
+
Val
TAC
[ENA]
>WENV057749
AACY023305428
Marine microbial communities from Global Ocean Sampling (GOS)
789
863
+
Val
TAC
[ENA]
>WENV057751
AACY023305541
Marine microbial communities from Global Ocean Sampling (GOS)
438
512
+
Val
TAC
[ENA]
>WENV057929
AACY023311773
Marine microbial communities from Global Ocean Sampling (GOS)
955
1029
+
Val
TAC
[ENA]
>WENV058634
AACY023336450
Marine microbial communities from Global Ocean Sampling (GOS)
1087
1161
+
Val
TAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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