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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.665176 (77 seq.)
>W1711128542
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
5040
4966
-
Asn
GTT
[ENA]
¡û
>W1711128543
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
4926
4852
-
Asn
GTT
[ENA]
¡û
>W1711128544
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
4810
4736
-
Asn
GTT
[ENA]
¡û
>W1711128546
LUSO01000002
Bacillota
Clostridium baratii [LUSO]
619694
619620
-
Asn
GTT
[ENA]
¡û
>W1711462063
MJHL01000010
Bacillota
Clostridium baratii [MJHL]
1177901
1177827
-
Asn
GTT
[ENA]
¡û
>W1711462096
MJHL01000027
Bacillota
Clostridium baratii [MJHL]
204340
204414
+
Asn
GTT
[ENA]
¡û
>W1711462097
MJHL01000027
Bacillota
Clostridium baratii [MJHL]
204454
204528
+
Asn
GTT
[ENA]
¡û
>W1711462098
MJHL01000027
Bacillota
Clostridium baratii [MJHL]
204570
204644
+
Asn
GTT
[ENA]
¡û
>W1711462100
MJHM01000002
Bacillota
Clostridium baratii [MJHM]
41
115
+
Asn
GTT
[ENA]
¡û
>W1711462162
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
4877
4803
-
Asn
GTT
[ENA]
¡û
>W1711462163
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
4763
4689
-
Asn
GTT
[ENA]
¡û
>W1711462164
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
4647
4573
-
Asn
GTT
[ENA]
¡û
>W1711462217
MJHN01000017
Bacillota
Clostridium baratii [MJHN]
5040
4966
-
Asn
GTT
[ENA]
¡û
>W1711462218
MJHN01000017
Bacillota
Clostridium baratii [MJHN]
4926
4852
-
Asn
GTT
[ENA]
¡û
>W1711462219
MJHN01000017
Bacillota
Clostridium baratii [MJHN]
4810
4736
-
Asn
GTT
[ENA]
¡û
>W1711462220
MJHN01000019
Bacillota
Clostridium baratii [MJHN]
41
115
+
Asn
GTT
[ENA]
¡û
>C171030617
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682659
1682585
-
Asn
GTT
-
¡û
>C171030618
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682545
1682471
-
Asn
GTT
-
¡û
>C171030619
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1682430
1682356
-
Asn
GTT
-
¡û
>C171030647
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1443282
1443208
-
Asn
GTT
-
¡û
>WENV180135530
OATK01083055
[OATK] human gut metagenome; faeces
66
140
+
Asn
GTT
[ENA]
¢þ
>WENV180170124
OAVU01003400
[OAVU] human gut metagenome; faeces
716
642
-
Asn
GTT
[ENA]
¢þ
>WENV180327069
OBKS01374900
[OBKS] human gut metagenome; human gut
1
75
+
Asn
GTT
[ENA]
¢þ
>WENV180438378
OBWR01001658
[OBWR] human gut metagenome; faeces
1115
1041
-
Asn
GTT
[ENA]
¢þ
>WENV180456671
OBXR01002190
[OBXR] human gut metagenome; faeces
1400
1326
-
Asn
GTT
[ENA]
¢þ
>WENV180606197
OCPT01006791
[OCPT] human gut metagenome; human gut
109
183
+
Asn
GTT
[ENA]
¢þ
>WENV181424298
OGCO01089622
[OGCO] human gut metagenome; human gut
110
184
+
Asn
GTT
[ENA]
¢þ
>WENV181788658
OGRO01002604
[OGRO] human gut metagenome; faeces
13588
13514
-
Asn
GTT
[ENA]
¢þ
>WENV181793887
OGRR01019526
[OGRR] human gut metagenome; faeces
186
260
+
Asn
GTT
[ENA]
¢þ
>WENV181875660
OGXC01000029
[OGXC] human gut metagenome; faeces
112550
112476
-
Asn
GTT
[ENA]
¢þ
>WENV181921408
OGYJ01036696
[OGYJ] human gut metagenome; faeces
966
892
-
Asn
GTT
[ENA]
¢þ
>W141259138
CBYM010000060
Bacillota
Clostridium saudiense JCC [CBYM]
277
351
+
Asn
GTT
[ENA]
¡û
>WENV182763571
OJRO01022727
[OJRO] human gut metagenome; stool sample
765
691
-
Asn
GTT
[ENA]
¢þ
>WENV182952103
OKVV01002830
[OKVV] human gut metagenome; human gut
2976
2902
-
Asn
GTT
[ENA]
¢þ
>WENV183103740
OLNJ01005698
[OLNJ] human gut metagenome; faeces
3047
2973
-
Asn
GTT
[ENA]
¢þ
>WENV183154939
OLOR01025932
[OLOR] human gut metagenome; faeces
1540
1466
-
Asn
GTT
[ENA]
¢þ
>WENV183173405
OLPD01003726
[OLPD] human gut metagenome; faeces
1252
1178
-
Asn
GTT
[ENA]
¢þ
>WENV183175306
OLPF01000149
[OLPF] human gut metagenome; faeces
83238
83164
-
Asn
GTT
[ENA]
¢þ
>WENV183197089
OLPU01013232
[OLPU] human gut metagenome; faeces
110
184
+
Asn
GTT
[ENA]
¢þ
>WENV183211304
OLQC01037955
[OLQC] human gut metagenome; faeces
1195
1121
-
Asn
GTT
[ENA]
¢þ
>WENV183234089
OLQV01010953
[OLQV] human gut metagenome; faeces
110
184
+
Asn
GTT
[ENA]
¢þ
>WENV183238160
OLQY01007516
[OLQY] human gut metagenome; faeces
3136
3062
-
Asn
GTT
[ENA]
¢þ
>WENV183241348
OLRA01107211
[OLRA] human gut metagenome; faeces
472
398
-
Asn
GTT
[ENA]
¢þ
>WENV183242126
OLRB01004826
[OLRB] human gut metagenome; faeces
3032
2958
-
Asn
GTT
[ENA]
¢þ
>WENV183506578
OMGY01001391
[OMGY] human gut metagenome; human gut
186
260
+
Asn
GTT
[ENA]
¢þ
>WENV183607694
OODO01035984
[OODO] human gut metagenome; human gut
690
616
-
Asn
GTT
[ENA]
¢þ
>C151014194
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1401373
1401447
+
Asn
GTT
[Ensembl]
¡û
>C151014195
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1401487
1401561
+
Asn
GTT
[Ensembl]
¡û
>C151014222
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1648873
1648947
+
Asn
GTT
[Ensembl]
¡û
>W1511551724
JZTY01000001
Bacillota
Clostridium baratii 771-14 [JZTY]
65
139
+
Asn
GTT
[ENA]
¡û
>W1511551755
JZTY01000007
Bacillota
Clostridium baratii 771-14 [JZTY]
206164
206238
+
Asn
GTT
[ENA]
¡û
>W1511551756
JZTY01000007
Bacillota
Clostridium baratii 771-14 [JZTY]
206278
206352
+
Asn
GTT
[ENA]
¡û
>W1511551757
JZTY01000007
Bacillota
Clostridium baratii 771-14 [JZTY]
206393
206467
+
Asn
GTT
[ENA]
¡û
>W1610099901
CYYT01000018
Bacillota
Clostridium disporicum [CYYT]
68848
68774
-
Asn
GTT
[ENA]
¡û
>W1610101643
CYZV01000029
Bacillota
Clostridium disporicum [CYZV]
28353
28279
-
Asn
GTT
[ENA]
¡û
>W1610103117
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
1732220
1732146
-
Asn
GTT
[ENA]
¡û
>W1610103176
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14643
14717
+
Asn
GTT
[ENA]
¡û
>W1610103177
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14757
14831
+
Asn
GTT
[ENA]
¡û
>W1610103178
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14872
14946
+
Asn
GTT
[ENA]
¡û
>W1610104236
CZBO01000009
Bacillota
Clostridium baratii [CZBO]
7
81
+
Asn
GTT
[ENA]
¡û
>W1610104250
CZBO01000014
Bacillota
Clostridium baratii [CZBO]
14386
14460
+
Asn
GTT
[ENA]
¡û
>W1610616857
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
1038845
1038771
-
Asn
GTT
[ENA]
¡û
>W1610616875
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
5019
4945
-
Asn
GTT
[ENA]
¡û
>W1610616876
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
4905
4831
-
Asn
GTT
[ENA]
¡û
>W1610616877
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
4790
4716
-
Asn
GTT
[ENA]
¡û
>W1710102656
CYYT01000018
Bacillota
Clostridium disporicum [CYYT]
68848
68774
-
Asn
GTT
[ENA]
¡û
>W1710104398
CYZV01000029
Bacillota
Clostridium disporicum [CYZV]
28353
28279
-
Asn
GTT
[ENA]
¡û
>W1710105872
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
1732220
1732146
-
Asn
GTT
[ENA]
¡û
>W1710105931
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14643
14717
+
Asn
GTT
[ENA]
¡û
>W1710105932
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14757
14831
+
Asn
GTT
[ENA]
¡û
>W1710105933
CZAV01000011
Bacillota
Clostridium baratii [CZAV]
14872
14946
+
Asn
GTT
[ENA]
¡û
>W1710106940
CZBO01000009
Bacillota
Clostridium baratii [CZBO]
7
81
+
Asn
GTT
[ENA]
¡û
>W1710106954
CZBO01000014
Bacillota
Clostridium baratii [CZBO]
14386
14460
+
Asn
GTT
[ENA]
¡û
>W1710742196
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
1038845
1038771
-
Asn
GTT
[ENA]
¡û
>W1710742214
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
5019
4945
-
Asn
GTT
[ENA]
¡û
>W1710742215
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
4905
4831
-
Asn
GTT
[ENA]
¡û
>W1710742216
LGRR01000026
Bacillota
Clostridium baratii [LGRR]
4790
4716
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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