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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.666267 (76 seq.)
>W1710925503
LODJ01000001
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [LODJ]
589760
589834
+
Arg
CCT
[ENA]
¡û
>W1710925624
LODK01000024
Gammaproteobacteria
Pseudoalteromonas sp. H100 [LODK]
273413
273487
+
Arg
CCT
[ENA]
¡û
>W1711724362
MTQD01000001
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
152972
152898
-
Arg
CCT
[ENA]
¡û
>C171097265
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
2731157
2731231
+
Arg
CCT
-
¡û
>C016420
CR954246
Gammaproteobacteria
Pseudoalteromonas translucida TAC125 [CR954246, CR954247]
790914
790988
+
Arg
CCT
[Ensembl]
¡û
>w021510
AAVS01000010
Gammaproteobacteria
Alteromonadales bacterium TW-7 [AAVS]
10309
10385
+
Arg
CCT
[ENA]
¡û
>W141086836
AUTL01000266
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
144223
144149
-
Arg
CCT
[ENA]
¡û
>W141086884
AUTM01000129
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
10962
10888
-
Arg
CCT
[ENA]
¡û
>W141086984
AUTN01000078
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
14109
14035
-
Arg
CCT
[ENA]
¡û
>W141087205
AUTP01000324
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
122072
122146
+
Arg
CCT
[ENA]
¡û
>W141087243
AUTQ01000099
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
94038
93964
-
Arg
CCT
[ENA]
¡û
>W141087349
AUTR01000022
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
111402
111328
-
Arg
CCT
[ENA]
¡û
>W141087426
AUTS01000001
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
111402
111328
-
Arg
CCT
[ENA]
¡û
>WENV182542994
OJAZ01013224
[OJAZ] seawater metagenome; Sea water
1149
1075
-
Arg
CCT
[ENA]
¢þ
>WENV182543712
OJBC01000558
[OJBC] seawater metagenome; Sea water
2408
2334
-
Arg
CCT
[ENA]
¢þ
>WENV182543740
OJBC01001438
[OJBC] seawater metagenome; Sea water
1437
1363
-
Arg
CCT
[ENA]
¢þ
>WENV182544691
OJBJ01000002
[OJBJ] seawater metagenome; Sea water
10632
10706
+
Arg
CCT
[ENA]
¢þ
>WENV182547255
OJBS01000040
[OJBS] seawater metagenome; Sea water
14082
14008
-
Arg
CCT
[ENA]
¢þ
>WENV182552450
OJCK01000154
[OJCK] seawater metagenome; Sea water
24510
24584
+
Arg
CCT
[ENA]
¢þ
>WENV182554588
OJCW01000008
[OJCW] seawater metagenome; Sea water
23507
23433
-
Arg
CCT
[ENA]
¢þ
>WENV182554596
OJCW01000068
[OJCW] seawater metagenome; Sea water
14445
14519
+
Arg
CCT
[ENA]
¢þ
>WENV182557212
OJDI01002252
[OJDI] seawater metagenome; Sea water
3933
4007
+
Arg
CCT
[ENA]
¢þ
>WENV182557602
OJDK01000618
[OJDK] seawater metagenome; Sea water
9116
9042
-
Arg
CCT
[ENA]
¢þ
>WENV182557863
OJDL01000227
[OJDL] seawater metagenome; Sea water
10388
10314
-
Arg
CCT
[ENA]
¢þ
>WENV182558691
OJDN01000801
[OJDN] seawater metagenome; Sea water
2978
3052
+
Arg
CCT
[ENA]
¢þ
>WENV182559026
OJDO01000024
[OJDO] seawater metagenome; Sea water
26668
26594
-
Arg
CCT
[ENA]
¢þ
>WENV182559036
OJDO01000077
[OJDO] seawater metagenome; Sea water
9758
9832
+
Arg
CCT
[ENA]
¢þ
>WENV182564531
OJEF01000924
[OJEF] seawater metagenome; Sea water
4655
4581
-
Arg
CCT
[ENA]
¢þ
>WENV182564641
OJEF01002470
[OJEF] seawater metagenome; Sea water
2552
2478
-
Arg
CCT
[ENA]
¢þ
>WENV182565319
OJEH01002316
[OJEH] seawater metagenome; Sea water
4865
4939
+
Arg
CCT
[ENA]
¢þ
>WENV182565849
OJEI01000243
[OJEI] seawater metagenome; Sea water
5129
5055
-
Arg
CCT
[ENA]
¢þ
>WENV182566080
OJEJ01000023
[OJEJ] seawater metagenome; Sea water
2408
2334
-
Arg
CCT
[ENA]
¢þ
>WENV182567586
OJEO01010777
[OJEO] seawater metagenome; Sea water
812
886
+
Arg
CCT
[ENA]
¢þ
>WENV182567667
OJEP01000035
[OJEP] seawater metagenome; Sea water
116016
116090
+
Arg
CCT
[ENA]
¢þ
>WENV182568609
OJEW01000013
[OJEW] seawater metagenome; Sea water
90845
90919
+
Arg
CCT
[ENA]
¢þ
>WENV182575183
OJFU01000516
[OJFU] seawater metagenome; Sea water
7605
7531
-
Arg
CCT
[ENA]
¢þ
>WENV182575230
OJFU01001410
[OJFU] seawater metagenome; Sea water
2899
2973
+
Arg
CCT
[ENA]
¢þ
>WENV182577078
OJGC01002554
[OJGC] seawater metagenome; Sea water
6
80
+
Arg
CCT
[ENA]
¢þ
>WENV182577635
OJGH01000061
[OJGH] seawater metagenome; Sea water
11832
11906
+
Arg
CCT
[ENA]
¢þ
>WENV182577703
OJGH01001701
[OJGH] seawater metagenome; Sea water
860
934
+
Arg
CCT
[ENA]
¢þ
>WENV182585250
OJHH01004909
[OJHH] seawater metagenome; Sea water
2797
2723
-
Arg
CCT
[ENA]
¢þ
>WENV182587460
OJHM01008389
[OJHM] seawater metagenome; Sea water
1032
1106
+
Arg
CCT
[ENA]
¢þ
>WENV182588070
OJHO01002138
[OJHO] seawater metagenome; Sea water
3688
3762
+
Arg
CCT
[ENA]
¢þ
>WENV182588928
OJHY01002826
[OJHY] seawater metagenome; Sea water
6
80
+
Arg
CCT
[ENA]
¢þ
>WENV182591082
OJIK01022501
[OJIK] seawater metagenome; Sea water
319
393
+
Arg
CCT
[ENA]
¢þ
>WENV182594288
OJIV01003039
[OJIV] seawater metagenome; Sea water
457
383
-
Arg
CCT
[ENA]
¢þ
>WENV183054780
OLGU01003400
[OLGU] seawater metagenome; Sea water
2393
2467
+
Arg
CCT
[ENA]
¢þ
>WENV183057623
OLHM01000009
[OLHM] seawater metagenome; Sea water
41636
41710
+
Arg
CCT
[ENA]
¢þ
>WENV183057639
OLHM01000099
[OLHM] seawater metagenome; Sea water
25043
24969
-
Arg
CCT
[ENA]
¢þ
>WENV183057944
OLHN01000018
[OLHN] seawater metagenome; Sea water
31544
31618
+
Arg
CCT
[ENA]
¢þ
>WENV183058002
OLHN01000504
[OLHN] seawater metagenome; Sea water
9407
9333
-
Arg
CCT
[ENA]
¢þ
>WENV183061528
OLHZ01024444
[OLHZ] seawater metagenome; Sea water
507
581
+
Arg
CCT
[ENA]
¢þ
>WENV170672805
LAZR01002321
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
7107
7033
-
Arg
CCT
[ENA]
¢þ
>WENV170923151
MDTG01044092
[MDTG] marine metagenome; seawater
635
709
+
Arg
CCT
[ENA]
¢þ
>C181010119
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
992736
992810
+
Arg
CCT
-
¡û
>C181010542
CP011036
Gammaproteobacteria
Pseudoalteromonas nigrifaciens KMM 661 [CP011036, CP011037]
853311
853385
+
Arg
CCT
-
¡û
>C181012539
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
965556
965630
+
Arg
CCT
-
¡û
>C181036654
CP019162
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [CP019162, CP019163]
6412
6486
+
Arg
CCT
-
¡û
>C181084526
CP023558
Gammaproteobacteria
Pseudoalteromonas marina ECSMB14103 [CP023558]
2565178
2565104
-
Arg
CCT
-
¡û
>W141621789
JJNY01000053
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
2814
2740
-
Arg
CCT
[ENA]
¡û
>W141621857
JJNZ01000021
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
63015
63089
+
Arg
CCT
[ENA]
¡û
>W1810155638
PJAV01000124
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
13489
13563
+
Arg
CCT
[ENA]
¡û
>W1810156631
PJBK01000090
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
159195
159269
+
Arg
CCT
[ENA]
¡û
>W1810157044
PJBQ01000071
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
29939
29865
-
Arg
CCT
[ENA]
¡û
>W1810157069
PJBR01000002
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
28503
28577
+
Arg
CCT
[ENA]
¡û
>W11121984
ADOP01000042
Gammaproteobacteria
Pseudoalteromonas distincta ANT/505 [ADOP]
25628
25554
-
Arg
CCT
[ENA]
¡û
>W1511477986
JWGY01000001
Gammaproteobacteria
Pseudoalteromonas sp. ECSMB14103 [JWGY]
595056
595130
+
Arg
CCT
[ENA]
¡û
>W1511518630
JXYD01000102
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
3313
3387
+
Arg
CCT
[ENA]
¡û
>C161031153
CP011034
Gammaproteobacteria
Pseudoalteromonas translucida KMM 520 [CP011034, CP011035]
831622
831696
+
Arg
CCT
[Ensembl]
¡û
>W121024733
AHBY01000003
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
217409
217483
+
Arg
CCT
[ENA]
¡û
>W121123039
BADT01000089
Gammaproteobacteria
Pseudoalteromonas sp. BSi20652 [BADT]
46169
46243
+
Arg
CCT
[ENA]
¡û
>W121123176
BADV01000045
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
27938
28012
+
Arg
CCT
[ENA]
¡û
>W121123347
BADY01000041
Gammaproteobacteria
Pseudoalteromonas sp. BSi20495 [BADY]
2693
2619
-
Arg
CCT
[ENA]
¡û
>W1610783149
LODJ01000001
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [LODJ]
589760
589834
+
Arg
CCT
[ENA]
¡û
>W1610783270
LODK01000024
Gammaproteobacteria
Pseudoalteromonas sp. H100 [LODK]
273413
273487
+
Arg
CCT
[ENA]
¡û
>W1710594328
FSRF01000001
Gammaproteobacteria
Pseudoalteromonas marina 13-15 [FSRF]
6412
6486
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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