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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.666339 (41 seq.)
>W141223829
BAEN01000061
Gammaproteobacteria
Aliiglaciecola lipolytica E3 [BAEN]
25027
24953
-
Gly
TCC
[ENA]
¡û
>W141242115
CAHY01000081
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
4041
4115
+
Gly
TCC
[ENA]
¡û
>WENV182542266
OJAX01000935
[OJAX] seawater metagenome; Sea water
83
157
+
Gly
TCC
[ENA]
¢þ
>WENV182542806
OJAZ01002791
[OJAZ] seawater metagenome; Sea water
4076
4150
+
Gly
TCC
[ENA]
¢þ
>WENV182543516
OJBB01001830
[OJBB] seawater metagenome; Sea water
4076
4150
+
Gly
TCC
[ENA]
¢þ
>WENV182550015
OJBZ01001687
[OJBZ] seawater metagenome; Sea water
6447
6521
+
Gly
TCC
[ENA]
¢þ
>WENV182555183
OJCY01007981
[OJCY] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV182555772
OJDD01000525
[OJDD] seawater metagenome; Sea water
6490
6416
-
Gly
TCC
[ENA]
¢þ
>WENV182557245
OJDI01003223
[OJDI] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV182560220
OJDT01009474
[OJDT] seawater metagenome; Sea water
180
254
+
Gly
TCC
[ENA]
¢þ
>WENV182562493
OJDZ01004855
[OJDZ] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV182567870
OJEP01001015
[OJEP] seawater metagenome; Sea water
136
62
-
Gly
TCC
[ENA]
¢þ
>WENV182568114
OJEQ01000514
[OJEQ] seawater metagenome; Sea water
404
478
+
Gly
TCC
[ENA]
¢þ
>WENV182568226
OJER01006628
[OJER] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV182570660
OJFE01000853
[OJFE] seawater metagenome; Sea water
252
326
+
Gly
TCC
[ENA]
¢þ
>WENV182571055
OJFG01000157
[OJFG] seawater metagenome; Sea water
679
605
-
Gly
TCC
[ENA]
¢þ
>WENV182572145
OJFL01000531
[OJFL] seawater metagenome; Sea water
18903
18977
+
Gly
TCC
[ENA]
¢þ
>WENV182572773
OJFM01013313
[OJFM] seawater metagenome; Sea water
739
813
+
Gly
TCC
[ENA]
¢þ
>WENV182572776
OJFM01013313
[OJFM] seawater metagenome; Sea water
136
62
-
Gly
TCC
[ENA]
¢þ
>WENV182573467
OJFP01002165
[OJFP] seawater metagenome; Sea water
7084
7158
+
Gly
TCC
[ENA]
¢þ
>WENV182574816
OJFS01002225
[OJFS] seawater metagenome; Sea water
4152
4226
+
Gly
TCC
[ENA]
¢þ
>WENV182576857
OJFZ01000755
[OJFZ] seawater metagenome; Sea water
252
326
+
Gly
TCC
[ENA]
¢þ
>WENV182576935
OJGB01000979
[OJGB] seawater metagenome; Sea water
278
204
-
Gly
TCC
[ENA]
¢þ
>WENV182577862
OJGL01000478
[OJGL] seawater metagenome; Sea water
1306
1232
-
Gly
TCC
[ENA]
¢þ
>WENV182581014
OJGW01051546
[OJGW] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV182587023
OJHK01035838
[OJHK] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV182588235
OJHP01002875
[OJHP] seawater metagenome; Sea water
199
273
+
Gly
TCC
[ENA]
¢þ
>WENV182588695
OJHW01003552
[OJHW] seawater metagenome; Sea water
408
482
+
Gly
TCC
[ENA]
¢þ
>WENV182591885
OJIO01011771
[OJIO] seawater metagenome; Sea water
1511
1437
-
Gly
TCC
[ENA]
¢þ
>WENV182592542
OJIR01003169
[OJIR] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV183055386
OLHB01001348
[OLHB] seawater metagenome; Sea water
994
1068
+
Gly
TCC
[ENA]
¢þ
>WENV183055390
OLHB01001348
[OLHB] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV170023871
BCQL01007281
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1478
1552
+
Gly
TCC
[ENA]
¢þ
>C191217662
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
4151569
4151495
-
Gly
TCC
-
¡û
>W1911641234
PYHU01000028
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
780
706
-
Gly
TCC
[ENA]
¡û
>C11100824
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
54514
54588
+
Gly
TCC
[Ensembl]
¡û
>C161051387
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
4067
4141
+
Gly
TCC
[Ensembl]
¡û
>C161062239
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
4101578
4101504
-
Gly
TCC
-
¡û
>C161071055
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
4025292
4025218
-
Gly
TCC
-
¡û
>C161086235
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
1734565
1734639
+
Gly
TCC
-
¡û
>C161086339
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
1709287
1709213
-
Gly
TCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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