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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.667622 (48 seq.)
>W1711082070
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
1843980
1844054
+
Thr
GGT
[ENA]
¡û
>W1711386437
MEFI01000007
Betaproteobacteria
Thiobacillus sp. SCN 63-1177 [MEFI]
286
212
-
Thr
GGT
[ENA]
¡û
>W1711386466
MEFK01000267
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
255
181
-
Thr
GGT
[ENA]
¡û
>W1711387313
MEGN01000001
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
285
211
-
Thr
GGT
[ENA]
¡û
>W1711423811
MIDJ01000191
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
33951
34025
+
Thr
GGT
[ENA]
¡û
>W1711504041
MKUE01000079
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
134740
134814
+
Thr
GGT
[ENA]
¡û
>W1711504099
MKUF01000015
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
601065
601139
+
Thr
GGT
[ENA]
¡û
>W1711504118
MKUG01000090
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
26083
26157
+
Thr
GGT
[ENA]
¡û
>W1711506500
MKWL01000019
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
200884
200958
+
Thr
GGT
[ENA]
¡û
>W1711506579
MKWN01000029
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
242
168
-
Thr
GGT
[ENA]
¡û
>C171049728
CP016448
Betaproteobacteria
Methyloversatilis sp. RAC08 [CP016448]
2522029
2522103
+
Thr
GGT
-
¡û
>W131160255
AQWL01000002
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
454456
454530
+
Thr
GGT
[ENA]
¡û
>W131163048
AQZM01000002
Betaproteobacteria
Methyloversatilis universalis EHg5 [AQZM]
617087
617161
+
Thr
GGT
[ENA]
¡û
>W131166931
ARCV01000006
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
43191
43265
+
Thr
GGT
[ENA]
¡û
>W131168095
ARDU01000009
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
466
392
-
Thr
GGT
[ENA]
¡û
>W131170312
ARFL01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
17002
16928
-
Thr
GGT
[ENA]
¡û
>W131186088
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
712958
713032
+
Thr
GGT
[ENA]
¡û
>W131186649
ARWH01000001
Betaproteobacteria
Methyloversatilis universalis Fam500 [ARWH]
3948941
3949015
+
Thr
GGT
[ENA]
¡û
>C025384
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
419255
419329
+
Thr
GGT
[Ensembl]
¡û
>WENV180310891
OBJT01046361
[OBJT] soil metagenome; soil
671
597
-
Thr
GGT
[ENA]
¢þ
>WENV181221642
OFCW01000212
[OFCW] microbial mat metagenome; Microbial Mat
20400
20326
-
Thr
GGT
[ENA]
¢þ
>WENV181223036
OFDC01001333
[OFDC] hot springs metagenome; Water
13237
13311
+
Thr
GGT
[ENA]
¢þ
>WENV181227452
OFDN01010881
[OFDN] hot springs metagenome; Water
218
144
-
Thr
GGT
[ENA]
¢þ
>WENV181311865
OFJB01017037
[OFJB] sludge metagenome; sludge
1661
1735
+
Thr
GGT
[ENA]
¢þ
>WENV181414234
OGCL01000131
[OGCL] hot springs metagenome; Hot spring water
190
116
-
Thr
GGT
[ENA]
¢þ
>WENV181838289
OGVM01033075
[OGVM] freshwater metagenome; freshwater
398
472
+
Thr
GGT
[ENA]
¢þ
>W141216097
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
2350315
2350241
-
Thr
GGT
[ENA]
¡û
>WENV183726091
PJQF01078800
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
357
283
-
Thr
GGT
[ENA]
¢þ
>WENV170007587
AMWB02142459
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1238
1312
+
Thr
GGT
[ENA]
¢þ
>WENV170573139
FLYJ01000493
[FLYJ] hot springs metagenome; Sediment
2624
2698
+
Thr
GGT
[ENA]
¢þ
>WENV170651926
JRYG01015244
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
168
94
-
Thr
GGT
[ENA]
¢þ
>WENV170654917
JRYL01086958
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
228
302
+
Thr
GGT
[ENA]
¢þ
>W09101597
AAFH01000008
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
18512
18438
-
Thr
GGT
[ENA]
¡û
>C191138948
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
1659235
1659161
-
Thr
GGT
-
¡û
>W1910183582
BJNV01000054
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
34511
34585
+
Thr
GGT
[ENA]
¡û
>W1910828044
MWUM01000001
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
88588
88662
+
Thr
GGT
[ENA]
¡û
>W1911802893
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
1757286
1757360
+
Thr
GGT
[ENA]
¡û
>W1810005507
BFBP01000012
Betaproteobacteria
Azospira sp. I13 [BFBP]
19364
19438
+
Thr
GGT
[ENA]
¡û
>W1810005520
BFBP01000024
Betaproteobacteria
Azospira sp. I13 [BFBP]
73875
73949
+
Thr
GGT
[ENA]
¡û
>W11114403
ADDK02000001
Betaproteobacteria
Azospira oryzae PS [ADDK]
1334262
1334188
-
Thr
GGT
[ENA]
¡û
>W11114406
ADDK02000001
Betaproteobacteria
Azospira oryzae PS [ADDK]
1157290
1157216
-
Thr
GGT
[ENA]
¡û
>W11162827
AFHG01000050
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
64086
64160
+
Thr
GGT
[ENA]
¡û
>C121006974
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
550893
550819
-
Thr
GGT
[Ensembl]
¡û
>C121006977
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
373921
373847
-
Thr
GGT
[Ensembl]
¡û
>W1610617587
LGUD01000001
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
194
120
-
Thr
GGT
[ENA]
¡û
>W1610617610
LGUD01000020
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
19004
18930
-
Thr
GGT
[ENA]
¡û
>W1710743137
LGUD01000001
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
194
120
-
Thr
GGT
[ENA]
¡û
>W1710743160
LGUD01000020
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
19004
18930
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK