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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.667715 (53 seq.)
>W1710808915
LKDZ01000008
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
180270
180196
-
Val
CAC
[ENA]
¡û
>W1710863084
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
985388
985462
+
Val
CAC
[ENA]
¡û
>W1710882266
LMTS01000004
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
80444
80370
-
Val
CAC
[ENA]
¡û
>W1711123818
LUJJ01000012
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
479783
479709
-
Val
CAC
[ENA]
¡û
>W1711143364
LVHG01000054
Betaproteobacteria
Variovorax paradoxus [LVHG]
14849
14775
-
Val
CAC
[ENA]
¡û
>W1711259818
LYVO01000014
Betaproteobacteria
Variovorax sp. KK3 [LYVO]
91581
91655
+
Val
CAC
[ENA]
¡û
>W1711386521
MEFM01000059
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
261052
261126
+
Val
CAC
[ENA]
¡û
>W1711387500
MEGR01000097
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
491320
491246
-
Val
CAC
[ENA]
¡û
>W1711506609
MKWO01000014
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
261106
261180
+
Val
CAC
[ENA]
¡û
>W1711581685
MNUL01000005
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
1205
1279
+
Val
CAC
[ENA]
¡û
>W1711584011
MNXY01000005
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
4079
4005
-
Val
CAC
[ENA]
¡û
>W1711721734
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
502328
502254
-
Val
CAC
[ENA]
¡û
>W131174644
ARIP01000070
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
111625
111551
-
Val
CAC
[ENA]
¡û
>W131180363
ARNA01000050
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
839199
839125
-
Val
CAC
[ENA]
¡û
>C018603
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
2381770
2381844
+
Val
CAC
[Ensembl]
¡û
>w008226
AAJK01000018
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
78347
78276
-
Val
CAC
[ENA]
¡û
>WENV180271390
OBEQ012269535
[OBEQ] groundwater metagenome; groundwater
145
219
+
Val
CAC
[ENA]
¢þ
>WENV183731305
PJTS01035208
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
218
144
-
Val
CAC
[ENA]
¢þ
>WENV183735296
PJUA01009362
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
611
537
-
Val
CAC
[ENA]
¢þ
>WENV183735619
PJUB01000219
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
21235
21309
+
Val
CAC
[ENA]
¢þ
>WENV183736328
PJUC01000772
[PJUC] soil metagenome; Soil enriched on filter paper
2466
2540
+
Val
CAC
[ENA]
¢þ
>WENV183741388
PJUG01000002
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
105067
105141
+
Val
CAC
[ENA]
¢þ
>WENV183741900
PJUH01000003
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
709007
708933
-
Val
CAC
[ENA]
¢þ
>WENV170556975
CXWL01017005
[CXWL] groundwater metagenome; biofilm material
12227
12301
+
Val
CAC
[ENA]
¢þ
>WENV170639662
JFJP01005704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
13786
13860
+
Val
CAC
[ENA]
¢þ
>W09119939
ACEE01000036
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
16146
16072
-
Val
CAC
[ENA]
¡û
>WENV170961858
MLJW01002873
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1710
1636
-
Val
CAC
[ENA]
¢þ
>C181078493
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
4389883
4389809
-
Val
CAC
-
¡û
>C181159368
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
633134
633208
+
Val
CAC
-
¡û
>C141002546
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
2458514
2458588
+
Val
CAC
[Ensembl]
¡û
>W1910744107
MHZY01000166
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
6869
6943
+
Val
CAC
[ENA]
¡û
>W1910792812
MRCN01000002
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
394788
394862
+
Val
CAC
[ENA]
¡û
>C09111095
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2293751
2293825
+
Val
CAC
[Ensembl]
¡û
>W1911775306
QXMN01000002
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
299578
299504
-
Val
CAC
[ENA]
¡û
>W1810046168
NNBQ01000002
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
768125
768199
+
Val
CAC
[ENA]
¡û
>W1810046265
NNBR01000002
Betaproteobacteria
Variovorax sp. B2 [NNBR]
768137
768211
+
Val
CAC
[ENA]
¡û
>W1511555000
JZWI01000014
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
148165
148091
-
Val
CAC
[ENA]
¡û
>W1610047761
BBDP01001046
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
1214
1288
+
Val
CAC
[ENA]
¡û
>W1610072149
BCUS01000022
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
45307
45381
+
Val
CAC
[ENA]
¡û
>W1610072197
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
351822
351748
-
Val
CAC
[ENA]
¡û
>W1610725430
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
985388
985462
+
Val
CAC
[ENA]
¡û
>W1610744192
LMTS01000004
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
80444
80370
-
Val
CAC
[ENA]
¡û
>W1610954372
LVHG01000054
Betaproteobacteria
Variovorax paradoxus [LVHG]
14849
14775
-
Val
CAC
[ENA]
¡û
>W1710044271
BBDP01001046
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
1214
1288
+
Val
CAC
[ENA]
¡û
>W1710069351
BCUS01000022
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
45307
45381
+
Val
CAC
[ENA]
¡û
>W1710069399
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
351822
351748
-
Val
CAC
[ENA]
¡û
>W1710506173
FMUJ01000001
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
1185685
1185759
+
Val
CAC
[ENA]
¡û
>W1710512946
FMZU01000011
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
178319
178245
-
Val
CAC
[ENA]
¡û
>W1710538151
FNUI01000009
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
142775
142701
-
Val
CAC
[ENA]
¡û
>W1710539569
FNVM01000009
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
217789
217863
+
Val
CAC
[ENA]
¡û
>W1710545302
FOBJ01000008
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
117826
117752
-
Val
CAC
[ENA]
¡û
>W1710557154
FOKS01000009
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
217781
217855
+
Val
CAC
[ENA]
¡û
>W1710562261
FOOV01000006
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
217790
217864
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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