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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.670288 (34 seq.)
>W1711422972
MICC01000073
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
3364
3290
-
Asn
GTT
[ENA]
¡û
>W1711422995
MICD01000648
Campylobacterota
Sulfurimonas sp. RIFOXYB2_FULL_37_5 [MICD]
547
621
+
Asn
GTT
[ENA]
¡û
>W1711422997
MICE01000012
Campylobacterota
Sulfurimonas sp. RIFOXYC2_FULL_36_7 [MICE]
1026
1100
+
Asn
GTT
[ENA]
¡û
>W1711423007
MICE01000383
Campylobacterota
Sulfurimonas sp. RIFOXYC2_FULL_36_7 [MICE]
3061
2987
-
Asn
GTT
[ENA]
¡û
>W1711423050
MICG01000331
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_36_11 [MICG]
3533
3459
-
Asn
GTT
[ENA]
¡û
>W1711423113
MICI01000234
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_37_8 [MICI]
3342
3268
-
Asn
GTT
[ENA]
¡û
>C025437
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
643990
644064
+
Asn
GTT
[Ensembl]
¡û
>C025459
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
644388
644314
-
Asn
GTT
[Ensembl]
¡û
>WENV183681993
ORMF010384790
[ORMF] groundwater metagenome; groundwater
61511
61437
-
Asn
GTT
[ENA]
¢þ
>WENV170005892
AMQJ01003462
[AMQJ] sediment metagenome; subsurface aquifer sediment
1792
1718
-
Asn
GTT
[ENA]
¢þ
>WENV170005909
AMQJ01004179
[AMQJ] sediment metagenome; subsurface aquifer sediment
110
36
-
Asn
GTT
[ENA]
¢þ
>C181197066
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1984762
1984688
-
Asn
GTT
-
¡û
>C181197067
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1984657
1984583
-
Asn
GTT
-
¡û
>C181197068
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1984559
1984485
-
Asn
GTT
-
¡û
>C191084501
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1922961
1922887
-
Asn
GTT
-
¡û
>C191084502
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1922870
1922796
-
Asn
GTT
-
¡û
>W09103217
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
2201227
2201301
+
Asn
GTT
[ENA]
¡û
>W1910744433
MIBO01000388
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
1087
1013
-
Asn
GTT
[ENA]
¡û
>W1910744560
MIBX01000086
Campylobacterota
Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 [MIBX]
100
26
-
Asn
GTT
[ENA]
¡û
>W1910744595
MIBY01000120
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
12050
11976
-
Asn
GTT
[ENA]
¡û
>W1910744602
MIBZ01000023
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
1771
1697
-
Asn
GTT
[ENA]
¡û
>W1910744618
MIBZ01000038
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
93
19
-
Asn
GTT
[ENA]
¡û
>W1911424164
NXFY01000004
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
70127
70053
-
Asn
GTT
[ENA]
¡û
>W1911424165
NXFY01000004
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
70036
69962
-
Asn
GTT
[ENA]
¡û
>W1911426198
NXID01000035
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
29475
29401
-
Asn
GTT
[ENA]
¡û
>W1911426199
NXID01000035
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
29370
29296
-
Asn
GTT
[ENA]
¡û
>W1911426200
NXID01000035
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
29272
29198
-
Asn
GTT
[ENA]
¡û
>W1911576241
PDJW01000007
Campylobacterota
Malaciobacter mytili T234 [PDJW]
9875
9949
+
Asn
GTT
[ENA]
¡û
>W1911576242
PDJW01000007
Campylobacterota
Malaciobacter mytili T234 [PDJW]
9980
10054
+
Asn
GTT
[ENA]
¡û
>W1911576243
PDJW01000007
Campylobacterota
Malaciobacter mytili T234 [PDJW]
10078
10152
+
Asn
GTT
[ENA]
¡û
>W1911576283
PDJX01000003
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
110222
110148
-
Asn
GTT
[ENA]
¡û
>W1911576284
PDJX01000003
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
110131
110057
-
Asn
GTT
[ENA]
¡û
>W1911576489
PDKC01000008
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
83639
83713
+
Asn
GTT
[ENA]
¡û
>W1911576649
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
447002
446928
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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