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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.670414 (114 seq.)
>W1710905374
LNNF01000110
Bacteroidota
Flavobacterium psychrophilum [LNNF]
17465
17391
-
Thr
GGT
[ENA]
¡û
>W1710914553
LNTP01000179
Bacteroidota
Flavobacterium psychrophilum [LNTP]
18652
18578
-
Thr
GGT
[ENA]
¡û
>W1710914572
LNTQ01000001
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
17465
17391
-
Thr
GGT
[ENA]
¡û
>W1711054008
LRTL01000006
Bacteroidota
Flavobacterium psychrophilum [LRTL]
8552
8478
-
Thr
GGT
[ENA]
¡û
>W1711138908
LVEN01000006
Bacteroidota
Flavobacterium piscis [LVEN]
73698
73772
+
Thr
GGT
[ENA]
¡û
>W131237956
AUSH01000082
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
46884
46958
+
Thr
GGT
[ENA]
¡û
>W1711431505
MIJV01000023
Bacteroidota
Flavobacterium psychrophilum [MIJV]
17238
17164
-
Thr
GGT
[ENA]
¡û
>W1711431555
MIJW01000050
Bacteroidota
Flavobacterium psychrophilum [MIJW]
19362
19288
-
Thr
GGT
[ENA]
¡û
>W1711712447
MTBY01000010
Bacteroidota
Flavobacterium psychrophilum [MTBY]
20208
20282
+
Thr
GGT
[ENA]
¡û
>W1711712482
MTBZ01000008
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
223147
223221
+
Thr
GGT
[ENA]
¡û
>W1711712540
MTCA01000097
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
727
653
-
Thr
GGT
[ENA]
¡û
>W1711712573
MTCB01000007
Bacteroidota
Flavobacterium psychrophilum [MTCB]
18261
18187
-
Thr
GGT
[ENA]
¡û
>W1711712624
MTCC01000020
Bacteroidota
Flavobacterium psychrophilum [MTCC]
17651
17577
-
Thr
GGT
[ENA]
¡û
>W1711712633
MTCD01000009
Bacteroidota
Flavobacterium psychrophilum [MTCD]
19226
19300
+
Thr
GGT
[ENA]
¡û
>W1711744070
MUFX01000003
Bacteroidota
Flavobacterium sp. LM5 [MUFX]
31838
31764
-
Thr
GGT
[ENA]
¡û
>W1711748575
MULJ01000006
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
56819
56745
-
Thr
GGT
[ENA]
¡û
>W1711751620
MUNX01000053
Bacteroidota
Flavobacterium sp. A45 [MUNX]
1575
1649
+
Thr
GGT
[ENA]
¡û
>C009528
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
1374954
1374880
-
Thr
GGT
[Ensembl]
¡û
>WENV181323168
OFKW01018024
[OFKW] marine metagenome; sea ice
241
169
-
Thr
GGT
[ENA]
¢þ
>W141291943
JATV01000012
Bacteroidota
Flavobacterium succinicans LMG 10402 [JATV]
80200
80274
+
Thr
GGT
[ENA]
¡û
>WENV170559480
CXWL01125133
[CXWL] groundwater metagenome; biofilm material
939
865
-
Thr
GGT
[ENA]
¢þ
>WENV171003838
NNBV01001744
[NNBV] plant metagenome; symbiotic tissue sample KVS11
1429
1503
+
Thr
GGT
[ENA]
¢þ
>C181047461
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
48721
48649
-
Thr
GGT
-
¡û
>C181220276
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
2268615
2268543
-
Thr
GGT
-
¡û
>W1910184599
BJSV01000072
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
17442
17370
-
Thr
GGT
[ENA]
¡û
>W1910184640
BJSW01000066
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
19938
20010
+
Thr
GGT
[ENA]
¡û
>W1910184660
BJSX01000034
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
18923
18851
-
Thr
GGT
[ENA]
¡û
>W1910184692
BJSY01000021
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
20067
20139
+
Thr
GGT
[ENA]
¡û
>W1910184730
BJSZ01000022
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
19928
20000
+
Thr
GGT
[ENA]
¡û
>W1910184781
BJTA01000038
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
19932
20004
+
Thr
GGT
[ENA]
¡û
>W1910184879
BJTD01000021
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
19995
20067
+
Thr
GGT
[ENA]
¡û
>W1910184918
BJTE01000025
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
17359
17287
-
Thr
GGT
[ENA]
¡û
>W1910184954
BJTF01000021
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
18546
18474
-
Thr
GGT
[ENA]
¡û
>W1910502987
FYBY01000040
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
17614
17542
-
Thr
GGT
[ENA]
¡û
>W1910503023
FYBZ01000039
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
49093
49165
+
Thr
GGT
[ENA]
¡û
>W1910503049
FYCA01000015
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
15949
16021
+
Thr
GGT
[ENA]
¡û
>W1910503087
FYCB01000051
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
17910
17838
-
Thr
GGT
[ENA]
¡û
>W1910503130
FYCC01000037
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
210448
210520
+
Thr
GGT
[ENA]
¡û
>W1910503163
FYCD01000044
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
210453
210525
+
Thr
GGT
[ENA]
¡û
>W1910503176
FYCE01000034
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
15956
16028
+
Thr
GGT
[ENA]
¡û
>W1910503209
FYCF01000026
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
17611
17539
-
Thr
GGT
[ENA]
¡û
>W1910503251
FYCG01000034
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
17500
17428
-
Thr
GGT
[ENA]
¡û
>W1910503278
FYCH01000017
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
17612
17540
-
Thr
GGT
[ENA]
¡û
>W1910503328
FYCI01000046
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
18087
18015
-
Thr
GGT
[ENA]
¡û
>W1910503552
FYCN01000241
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
160
232
+
Thr
GGT
[ENA]
¡û
>W1910503565
FYCO01000028
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
17911
17839
-
Thr
GGT
[ENA]
¡û
>W1910503608
FYCP01000151
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
152
224
+
Thr
GGT
[ENA]
¡û
>W1910503633
FYCQ01000202
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
152
224
+
Thr
GGT
[ENA]
¡û
>W1910503648
FYCR01000333
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
156
228
+
Thr
GGT
[ENA]
¡û
>W1910503669
FYCS01000031
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
210453
210525
+
Thr
GGT
[ENA]
¡û
>W1910503706
FYCT01000029
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
210544
210616
+
Thr
GGT
[ENA]
¡û
>W1910503741
FYCU01000164
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
152
224
+
Thr
GGT
[ENA]
¡û
>W1910503765
FYCV01000185
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
8473
8401
-
Thr
GGT
[ENA]
¡û
>W1910503777
FYCW01000007
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
205089
205161
+
Thr
GGT
[ENA]
¡û
>W1910503810
FYCX01000003
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
19599
19527
-
Thr
GGT
[ENA]
¡û
>W1910503861
FYCY01000029
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
192578
192650
+
Thr
GGT
[ENA]
¡û
>W1910503904
FYCZ01000032
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
210314
210386
+
Thr
GGT
[ENA]
¡û
>W1910503942
FYDA01000064
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
192497
192569
+
Thr
GGT
[ENA]
¡û
>W1910503976
FYDB01000041
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
17342
17270
-
Thr
GGT
[ENA]
¡û
>W1910504021
FYDC01000039
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
19343
19271
-
Thr
GGT
[ENA]
¡û
>W1910504126
FYDF01000058
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
17353
17281
-
Thr
GGT
[ENA]
¡û
>W1910505689
FYEO01000238
Bacteroidota
Flavobacterium psychrophilum FPC 840 [FYEO]
162
234
+
Thr
GGT
[ENA]
¡û
>W1910576480
JSCD01000004
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
17651
17579
-
Thr
GGT
[ENA]
¡û
>W1910576622
JSWL01000004
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
18261
18189
-
Thr
GGT
[ENA]
¡û
>W1910808828
MUGR01000004
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
20852
20780
-
Thr
GGT
[ENA]
¡û
>W1910808916
MUGS01000061
Bacteroidota
Flavobacterium araucananum DSM 24704 [MUGS]
67377
67305
-
Thr
GGT
[ENA]
¡û
>W1910809399
MUHC01000016
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
53802
53730
-
Thr
GGT
[ENA]
¡û
>W1910809503
MUHE01000019
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
19948
20020
+
Thr
GGT
[ENA]
¡û
>W1810072170
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
1726485
1726557
+
Thr
GGT
[ENA]
¡û
>SRA1004900
SRR006906.176118
metagenomic water samples (SRP000427)
172
246
+
Thr
GGT
[SRA]
>W1810533245
QCZH01000012
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
47875
47947
+
Thr
GGT
[ENA]
¡û
>W1810577026
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
984685
984613
-
Thr
GGT
[ENA]
¡û
>W1810596079
QGGJ01000010
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
67204
67132
-
Thr
GGT
[ENA]
¡û
>W1810684420
QKXH01000012
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
57482
57410
-
Thr
GGT
[ENA]
¡û
>W1810722618
QNUX01000019
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
35434
35362
-
Thr
GGT
[ENA]
¡û
>W1810723013
QNVY01000001
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
1264632
1264704
+
Thr
GGT
[ENA]
¡û
>W1810763371
QQBA01000013
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
68966
69038
+
Thr
GGT
[ENA]
¡û
>C151018512
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
2276067
2275993
-
Thr
GGT
[Ensembl]
¡û
>C151018541
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
787712
787786
+
Thr
GGT
[Ensembl]
¡û
>C151030349
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2325645
2325571
-
Thr
GGT
[Ensembl]
¡û
>C151038984
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
1242733
1242659
-
Thr
GGT
[Ensembl]
¡û
>C151039022
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
1226351
1226277
-
Thr
GGT
[Ensembl]
¡û
>C151039059
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
1234794
1234720
-
Thr
GGT
[Ensembl]
¡û
>C151039549
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
1226984
1226910
-
Thr
GGT
[Ensembl]
¡û
>C151065080
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
1369520
1369446
-
Thr
GGT
-
¡û
>C151065128
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
1371960
1371886
-
Thr
GGT
-
¡û
>C151072395
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
1752630
1752556
-
Thr
GGT
-
¡û
>W1511357165
JRWA01000007
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
543477
543403
-
Thr
GGT
[ENA]
¡û
>W1511357206
JRWB01000023
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
382224
382150
-
Thr
GGT
[ENA]
¡û
>W1511357249
JRWC01000005
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
543358
543284
-
Thr
GGT
[ENA]
¡û
>W1511357300
JRWD01000107
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
37716
37642
-
Thr
GGT
[ENA]
¡û
>W1511357347
JRWE01000109
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
37714
37640
-
Thr
GGT
[ENA]
¡û
>W1511357394
JRWF01000102
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
37714
37640
-
Thr
GGT
[ENA]
¡û
>C161024447
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
1369123
1369049
-
Thr
GGT
-
¡û
>C161024495
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
1329908
1329834
-
Thr
GGT
-
¡û
>C161024543
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
1326716
1326642
-
Thr
GGT
-
¡û
>W121034205
AHKF01000017
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
34712
34786
+
Thr
GGT
[ENA]
¡û
>W1610062183
BCNG01000010
Bacteroidota
Flavobacterium psychrophilum [BCNG]
17582
17508
-
Thr
GGT
[ENA]
¡û
>W1610764388
LNNF01000110
Bacteroidota
Flavobacterium psychrophilum [LNNF]
17465
17391
-
Thr
GGT
[ENA]
¡û
>W1610772912
LNTP01000179
Bacteroidota
Flavobacterium psychrophilum [LNTP]
18652
18578
-
Thr
GGT
[ENA]
¡û
>W1610772931
LNTQ01000001
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
17465
17391
-
Thr
GGT
[ENA]
¡û
>W1610895196
LRTL01000006
Bacteroidota
Flavobacterium psychrophilum [LRTL]
8552
8478
-
Thr
GGT
[ENA]
¡û
>W1610949916
LVEN01000006
Bacteroidota
Flavobacterium piscis [LVEN]
73698
73772
+
Thr
GGT
[ENA]
¡û
>W1710059724
BCNG01000010
Bacteroidota
Flavobacterium psychrophilum [BCNG]
17582
17508
-
Thr
GGT
[ENA]
¡û
>W1710087858
BDSH01000009
Bacteroidota
Flavobacterium psychrophilum [BDSH]
18270
18196
-
Thr
GGT
[ENA]
¡û
>W1710507341
FMVE01000016
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
36437
36511
+
Thr
GGT
[ENA]
¡û
>W1710528025
FNMV01000005
Bacteroidota
Flavobacterium degerlachei [FNMV]
62312
62386
+
Thr
GGT
[ENA]
¡û
>W1710538661
FNUS01000004
Bacteroidota
Halpernia humi [FNUS]
127941
127867
-
Thr
GGT
[ENA]
¡û
>W1710555813
FOJT01000001
Bacteroidota
Flavobacterium swingsii [FOJT]
365433
365359
-
Thr
GGT
[ENA]
¡û
>W1710569868
FOUT01000011
Bacteroidota
Flavobacterium succinicans [FOUT]
80423
80497
+
Thr
GGT
[ENA]
¡û
>W1710585063
FQWB01000003
Bacteroidota
Flavobacterium fluvii [FQWB]
115568
115642
+
Thr
GGT
[ENA]
¡û
>W1710585218
FQWE01000010
Bacteroidota
Flavobacterium segetis [FQWE]
33816
33890
+
Thr
GGT
[ENA]
¡û
>W1710585238
FQWF01000006
Bacteroidota
Flavobacterium micromati [FQWF]
184025
184099
+
Thr
GGT
[ENA]
¡û
>W1710585277
FQWG01000007
Bacteroidota
Flavobacterium frigidimaris [FQWG]
20995
20921
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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