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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.670431 (77 seq.)
>A171003610
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
660765
660693
-
Arg
CCG
-
¡û
>A171004796
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4024830
4024758
-
Arg
CCG
-
¡û
>A171004849
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
3960309
3960237
-
Arg
CCG
-
¡û
>A171004905
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4412767
4412695
-
Arg
CCG
-
¡û
>A171004933
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
788200
788272
+
Arg
CCG
-
¡û
>A171004985
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
760462
760534
+
Arg
CCG
-
¡û
>A171005037
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
785005
785077
+
Arg
CCG
-
¡û
>A171005124
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
925071
924999
-
Arg
CCG
-
¡û
>A171005142
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
790414
790486
+
Arg
CCG
-
¡û
>A171005246
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
903150
903223
+
Arg
CCG
-
¡û
>WENV180345611
OBLN01001016
[OBLN] sediment metagenome; sediment
8244
8316
+
Arg
CCG
[ENA]
¢þ
>At1423
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
4673856
4673785
-
Arg
CCG
[Ensembl]
¡û
>At1530
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
798626
798555
-
Arg
CCG
[Ensembl]
¡û
>WENV170724366
LSQX01302579
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
20457
20529
+
Arg
CCG
[ENA]
¢þ
>W1910569260
JJOR01000137
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
24279
24351
+
Arg
CCG
[ENA]
¡û
>W1910569309
JJOS01000086
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
25383
25455
+
Arg
CCG
[ENA]
¡û
>W1910569378
JJOT01000134
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
24294
24366
+
Arg
CCG
[ENA]
¡û
>W1910569422
JJOU01000207
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
2319
2247
-
Arg
CCG
[ENA]
¡û
>W1910569483
JJOW01000086
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
12488
12559
+
Arg
CCG
[ENA]
¡û
>W1910569564
JJOX01000079
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
327301
327372
+
Arg
CCG
[ENA]
¡û
>W1910569591
JJOY01000013
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
22668
22739
+
Arg
CCG
[ENA]
¡û
>W1910569630
JJOZ01000006
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
217777
217848
+
Arg
CCG
[ENA]
¡û
>W1910569728
JJPA01000238
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
24241
24313
+
Arg
CCG
[ENA]
¡û
>W1910569765
JJPB01000108
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
24321
24393
+
Arg
CCG
[ENA]
¡û
>W1910569833
JJPC01000163
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
25452
25524
+
Arg
CCG
[ENA]
¡û
>W1910569865
JJPD01000148
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
21505
21577
+
Arg
CCG
[ENA]
¡û
>W1910569917
JJPE01000107
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
24286
24358
+
Arg
CCG
[ENA]
¡û
>W1910569968
JJPF01000071
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
24265
24337
+
Arg
CCG
[ENA]
¡û
>W1910570039
JJPG01000157
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
24335
24407
+
Arg
CCG
[ENA]
¡û
>W1910570078
JJPH01000105
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
24272
24344
+
Arg
CCG
[ENA]
¡û
>W1910570091
JJPI01000001
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
11752
11824
+
Arg
CCG
[ENA]
¡û
>W1910570175
JJPJ01000067
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
29721
29793
+
Arg
CCG
[ENA]
¡û
>W1910570224
JJPK01000085
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
29400
29472
+
Arg
CCG
[ENA]
¡û
>W1910570252
JJPL01000045
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
24235
24307
+
Arg
CCG
[ENA]
¡û
>W1910570310
JJPM01000100
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
2343
2271
-
Arg
CCG
[ENA]
¡û
>W1910570352
JJPN01000026
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
29586
29658
+
Arg
CCG
[ENA]
¡û
>W1910570428
JJPO01000127
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
131641
131569
-
Arg
CCG
[ENA]
¡û
>W1910570481
JJPP01000133
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
51846
51774
-
Arg
CCG
[ENA]
¡û
>W1910570500
JJPQ01000007
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
24307
24379
+
Arg
CCG
[ENA]
¡û
>W1910570571
JJPR01000089
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
29554
29626
+
Arg
CCG
[ENA]
¡û
>W1910570604
JJPS01000032
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
29526
29598
+
Arg
CCG
[ENA]
¡û
>W1910570667
JJPT01000055
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
27802
27730
-
Arg
CCG
[ENA]
¡û
>W1910570698
JJPU01000005
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
11773
11845
+
Arg
CCG
[ENA]
¡û
>W1910570770
JJPV01000046
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
24279
24351
+
Arg
CCG
[ENA]
¡û
>W1910570839
JJPW01000081
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
11777
11849
+
Arg
CCG
[ENA]
¡û
>W1910570861
JJPX01000043
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
29463
29535
+
Arg
CCG
[ENA]
¡û
>W1910570947
JJPY01000122
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
29619
29691
+
Arg
CCG
[ENA]
¡û
>W1910570981
JJPZ01000107
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
11720
11792
+
Arg
CCG
[ENA]
¡û
>W1910571014
JJQA01000038
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
25305
25233
-
Arg
CCG
[ENA]
¡û
>W1910571055
JJQB01000016
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
24576
24648
+
Arg
CCG
[ENA]
¡û
>W1910571110
JJQC01000038
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
22563
22635
+
Arg
CCG
[ENA]
¡û
>W1910571172
JJQD01000070
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
9330
9402
+
Arg
CCG
[ENA]
¡û
>W1910571242
JJQE01000159
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
24279
24351
+
Arg
CCG
[ENA]
¡û
>W1910571259
JJQF01000033
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
24469
24541
+
Arg
CCG
[ENA]
¡û
>W1910571334
JJQG01000115
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
11776
11848
+
Arg
CCG
[ENA]
¡û
>W1910571388
JJQH01000153
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
11774
11846
+
Arg
CCG
[ENA]
¡û
>W1910571424
JJQI01000041
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
29601
29673
+
Arg
CCG
[ENA]
¡û
>W1910571505
JJQJ01000221
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
24285
24357
+
Arg
CCG
[ENA]
¡û
>W1910571556
JJQK01000274
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
20532
20604
+
Arg
CCG
[ENA]
¡û
>W1910571665
JJQM01000148
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
24279
24351
+
Arg
CCG
[ENA]
¡û
>W1910571740
JJQN01000195
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
47803
47875
+
Arg
CCG
[ENA]
¡û
>W1910571793
JJQO01000340
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
24286
24358
+
Arg
CCG
[ENA]
¡û
>W1910571827
JJQP01000182
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
9722
9794
+
Arg
CCG
[ENA]
¡û
>W1910571887
JJQQ01000153
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
29555
29627
+
Arg
CCG
[ENA]
¡û
>W1910571910
JJQR01000034
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
11767
11839
+
Arg
CCG
[ENA]
¡û
>W1910571989
JJQS01000100
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
25383
25455
+
Arg
CCG
[ENA]
¡û
>W1910572035
JJQT01000182
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
11767
11839
+
Arg
CCG
[ENA]
¡û
>W1910572063
JJQU01000066
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
5062
4990
-
Arg
CCG
[ENA]
¡û
>W1910572138
JJQV01000091
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
25383
25455
+
Arg
CCG
[ENA]
¡û
>W1910572153
JJQW01000004
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
25376
25448
+
Arg
CCG
[ENA]
¡û
>W1910572228
JJQX01000154
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
11767
11839
+
Arg
CCG
[ENA]
¡û
>W1910572304
JJQZ01000051
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
25383
25455
+
Arg
CCG
[ENA]
¡û
>W1910572354
JJRA01000019
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
25517
25589
+
Arg
CCG
[ENA]
¡û
>W1910572425
JJRB01000088
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
25459
25531
+
Arg
CCG
[ENA]
¡û
>W1910575082
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
109956
109884
-
Arg
CCG
[ENA]
¡û
>W1610045099
BBBC01000015
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
24241
24313
+
Pseudo
CCG
[ENA]
¡û
>W1610046912
BBCW01000051
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
686
759
+
Pseudo
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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