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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.671271 (29 seq.)
>W1711361086
MDKE01000041
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
11753
11679
-
Gln
TTG
[ENA]
¡û
>W131180100
ARMW01000024
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
189524
189598
+
Gln
TTG
[ENA]
¡û
>W131180101
ARMW01000024
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
189688
189762
+
Gln
TTG
[ENA]
¡û
>W131180104
ARMW01000024
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
190022
190096
+
Gln
TTG
[ENA]
¡û
>C171118261
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
1370021
1370095
+
Gln
TTG
-
¡û
>C171118262
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
1370177
1370251
+
Gln
TTG
-
¡û
>C171118265
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
1370637
1370711
+
Gln
TTG
-
¡û
>WENV170016178
AZIJ01014587
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
2407
2481
+
Gln
TTG
[ENA]
¢þ
>WENV170016179
AZIJ01014587
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
2603
2677
+
Gln
TTG
[ENA]
¢þ
>W1910784568
MPZM01000023
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
35082
35156
+
Gln
TTG
[ENA]
¡û
>W1910784569
MPZM01000023
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
35203
35277
+
Gln
TTG
[ENA]
¡û
>W1910784572
MPZM01000023
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
35570
35644
+
Gln
TTG
[ENA]
¡û
>W1910852616
NBIM01000002
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
12887
12813
-
Gln
TTG
[ENA]
¡û
>W1910852617
NBIM01000002
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
12762
12688
-
Gln
TTG
[ENA]
¡û
>W1910852620
NBIM01000002
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
12372
12298
-
Gln
TTG
[ENA]
¡û
>W1911174128
NQJF01000001
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
339099
339173
+
Gln
TTG
[ENA]
¡û
>W1911174129
NQJF01000001
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
339222
339296
+
Gln
TTG
[ENA]
¡û
>W1911174132
NQJF01000001
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
339530
339604
+
Gln
TTG
[ENA]
¡û
>W1810471861
QAGM01000008
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
34645
34571
-
Gln
TTG
[ENA]
¡û
>W1810471862
QAGM01000008
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
34520
34446
-
Gln
TTG
[ENA]
¡û
>W1810471865
QAGM01000008
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
34204
34130
-
Gln
TTG
[ENA]
¡û
>W1810533053
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1678092
1678166
+
Gln
TTG
[ENA]
¡û
>W1810533054
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1678213
1678287
+
Gln
TTG
[ENA]
¡û
>W1810533057
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1678600
1678674
+
Gln
TTG
[ENA]
¡û
>C121007378
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
1346425
1346351
-
Gln
TTG
[Ensembl]
¡û
>C121007379
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
1346229
1346155
-
Gln
TTG
[Ensembl]
¡û
>C121007382
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
1345840
1345766
-
Gln
TTG
[Ensembl]
¡û
>W1610041932
BAXG01000028
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
34954
34880
-
Gln
TTG
[ENA]
¡û
>W1710039026
BAXG01000028
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
34954
34880
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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