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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.671377 (55 seq.)
>W1710863882
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
295634
295708
+
Thr
GGT
[ENA]
¡û
>W1710865561
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
26024
25950
-
Thr
GGT
[ENA]
¡û
>W1710873850
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
221625
221551
-
Thr
GGT
[ENA]
¡û
>W1710876111
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
105335
105261
-
Thr
GGT
[ENA]
¡û
>W1710877315
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
23471
23545
+
Thr
GGT
[ENA]
¡û
>W1711407976
MGLM01000219
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
3128
3202
+
Thr
GGT
[ENA]
¡û
>W1711407994
MGLN01000021
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
5884
5810
-
Thr
GGT
[ENA]
¡û
>C171094879
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
1748386
1748312
-
Thr
GGT
-
¡û
>W131052427
AMYY01000011
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
26598
26672
+
Thr
GGT
[ENA]
¡û
>WENV180033912
FTKM01000022
[FTKM] metagenome; soil
251914
251840
-
Thr
GGT
[ENA]
¢þ
>WENV180364197
OBNZ01131309
[OBNZ] marine metagenome; ENVO:00002010
203
277
+
Thr
GGT
[ENA]
¢þ
>W141042994
AMFA01000019
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
8418
8344
-
Thr
GGT
[ENA]
¡û
>WENV181223295
OFDC01005515
[OFDC] hot springs metagenome; Water
4224
4298
+
Thr
GGT
[ENA]
¢þ
>WENV181227165
OFDN01002613
[OFDN] hot springs metagenome; Water
4141
4067
-
Thr
GGT
[ENA]
¢þ
>WENV181384305
OFRI01000094
[OFRI] wastewater metagenome; Exp Tend VB 90WW
12207
12281
+
Thr
GGT
[ENA]
¢þ
>W08010825
ABRU01000032
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
3019
2948
-
Thr
GGT
[ENA]
¡û
>W141230483
BATC01000075
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
7575
7649
+
Thr
GGT
[ENA]
¡û
>WENV183697956
OUNK010503809
[OUNK] metagenome; soil
317
243
-
Thr
GGT
[ENA]
¢þ
>WENV170200901
CEPP01008438
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1318
1244
-
Thr
GGT
[ENA]
¢þ
>WENV170574410
FLYM01035073
[FLYM] hot springs metagenome; Sediment
3
77
+
Thr
GGT
[ENA]
¢þ
>WENV170658929
JUGB01000198
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
1985
2059
+
Thr
GGT
[ENA]
¢þ
>WENV170714614
LNFM01086850
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
727
801
+
Thr
GGT
[ENA]
¢þ
>WENV170784063
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
386096
386170
+
Thr
GGT
[ENA]
¢þ
>WENV170838380
MDSZ01166767
[MDSZ] marine metagenome; seawater
97585
97659
+
Thr
GGT
[ENA]
¢þ
>C181056250
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2926337
2926263
-
Thr
GGT
-
¡û
>C191166129
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1745735
1745661
-
Thr
GGT
-
¡û
>C191189120
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2269013
2269087
+
Thr
GGT
-
¡û
>W141712453
JMQR01000094
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
7007
7081
+
Thr
GGT
[ENA]
¡û
>W1910725215
MGLJ01000177
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
8367
8441
+
Thr
GGT
[ENA]
¡û
>W1911566759
PCPB01000018
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
38097
38023
-
Thr
GGT
[ENA]
¡û
>W1911566972
PCPF01000022
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
38102
38028
-
Thr
GGT
[ENA]
¡û
>W1911567212
PCPK01000019
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
38163
38089
-
Thr
GGT
[ENA]
¡û
>W1911567304
PCPM01000025
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
6943
7017
+
Thr
GGT
[ENA]
¡û
>W1911567409
PCPO01000027
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
38078
38004
-
Thr
GGT
[ENA]
¡û
>W1911737853
QTTA01000016
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
87011
87085
+
Thr
GGT
[ENA]
¡û
>W1911738132
QUOQ01000002
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
534980
535054
+
Thr
GGT
[ENA]
¡û
>W1810000954
BEWU01000006
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
71211
71285
+
Thr
GGT
[ENA]
¡û
>W1810693166
QLLC01000020
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
22343
22417
+
Thr
GGT
[ENA]
¡û
>W10109857
ADBM01000011
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
7151
7225
+
Thr
GGT
[ENA]
¡û
>C10102204
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2251374
2251448
+
Thr
GGT
[Ensembl]
¡û
>W1510639853
CVJQ01000002
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
80058
80132
+
Thr
GGT
[ENA]
¡û
>W11112294
ADBM01000011
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
7151
7225
+
Thr
GGT
[ENA]
¡û
>W1511489477
JWSY01000023
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
67272
67198
-
Thr
GGT
[ENA]
¡û
>W1511547885
JZRG01000018
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
230598
230672
+
Thr
GGT
[ENA]
¡û
>C161047048
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2696377
2696451
+
Thr
GGT
[Ensembl]
¡û
>C161089101
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1462934
1463008
+
Thr
GGT
[Ensembl]
¡û
>W1610074199
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
62431
62505
+
Thr
GGT
[ENA]
¡û
>W1610726228
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
295634
295708
+
Thr
GGT
[ENA]
¡û
>W1610727907
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
26024
25950
-
Thr
GGT
[ENA]
¡û
>W1610736196
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
221625
221551
-
Thr
GGT
[ENA]
¡û
>W1610738457
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
105335
105261
-
Thr
GGT
[ENA]
¡û
>W1610739661
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
23471
23545
+
Thr
GGT
[ENA]
¡û
>W1710071317
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
62431
62505
+
Thr
GGT
[ENA]
¡û
>W1710084606
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
446556
446630
+
Thr
GGT
[ENA]
¡û
>W1710527019
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
744584
744658
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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