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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.671433 (12 seq.)
>W1711624502
MPHJ01000026
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
1215
1141
-
Gln
TTG
[ENA]
¡û
>C171033386
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4945200
4945126
-
Gln
TTG
-
¡û
>C171033389
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4944762
4944688
-
Gln
TTG
-
¡û
>W08005717
ABIC01000090
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
2330
2259
-
Gln
TTG
[ENA]
¡û
>W08005720
ABIC01000090
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
1703
1632
-
Gln
TTG
[ENA]
¡û
>WENV170022239
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2829
2903
+
Gln
TTG
[ENA]
¢þ
>C181214201
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3868262
3868188
-
Gln
TTG
-
¡û
>C181214204
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3867800
3867726
-
Gln
TTG
-
¡û
>W1911551671
OXJV01000016
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
370187
370113
-
Gln
TTG
[ENA]
¡û
>W1911710053
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
209281
209207
-
Gln
TTG
[ENA]
¡û
>C10112878
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3837500
3837426
-
Gln
TTG
[Ensembl]
¡û
>C10112881
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3836939
3836865
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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