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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.671532 (29 seq.)
>W131164178
ARAI01000029
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
72612
72684
+
Thr
GGT
[ENA]
¡û
>WENV180103355
OAPA01020083
[OAPA] marine metagenome; ENVO:00002010
541
469
-
Thr
GGT
[ENA]
¢þ
>WENV180115360
OAPS01220559
[OAPS] marine metagenome; sea water
166
238
+
Thr
GGT
[ENA]
¢þ
>WENV180368502
OBOF01112371
[OBOF] marine metagenome; ENVO:00002010
403
331
-
Thr
GGT
[ENA]
¢þ
>WENV180393529
OBPQ01067881
[OBPQ] marine metagenome; polypropylene bottle
280
352
+
Thr
GGT
[ENA]
¢þ
>WENV181837953
OGVL01024723
[OGVL] freshwater metagenome; freshwater
107
35
-
Thr
GGT
[ENA]
¢þ
>WENV170249668
CEQS01029008
[CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
56062
56136
+
Thr
GGT
[ENA]
¢þ
>WENV170574481
FLYM01044386
[FLYM] hot springs metagenome; Sediment
168
96
-
Thr
GGT
[ENA]
¢þ
>C181063477
CP022378
Bacteroidota
Capnocytophaga cynodegmi G7591 [CP022378]
1998996
1999068
+
Thr
GGT
-
¡û
>C181063594
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
644241
644169
-
Thr
GGT
-
¡û
>C181063638
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
635826
635754
-
Thr
GGT
-
¡û
>C181063680
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
978542
978470
-
Thr
GGT
-
¡û
>C181063910
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
731794
731722
-
Thr
GGT
-
¡û
>C181063955
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
897373
897301
-
Thr
GGT
-
¡û
>C181063996
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
939637
939565
-
Thr
GGT
-
¡û
>C191093562
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
1330385
1330313
-
Thr
GGT
-
¡û
>C191213498
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
922913
922841
-
Thr
GGT
-
¡û
>W1911239235
NSDI01000002
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
248593
248521
-
Thr
GGT
[ENA]
¡û
>W1810101886
PGTV01000001
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
708796
708868
+
Thr
GGT
[ENA]
¡û
>W1510076143
CDOD01000003
Bacteroidota
Capnocytophaga cynodegmi Ccyn2B [CDOD]
193893
193965
+
Thr
GGT
[ENA]
¡û
>W1510076203
CDOE01000076
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
44994
45066
+
Thr
GGT
[ENA]
¡û
>W1510076242
CDOF01000073
Bacteroidota
Capnocytophaga cynodegmi Ccyn_ATCC49044 [CDOF]
4258
4186
-
Thr
GGT
[ENA]
¡û
>W1510076271
CDOG01000026
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
16168
16240
+
Thr
GGT
[ENA]
¡û
>W1510076313
CDOH01000121
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
13334
13406
+
Thr
GGT
[ENA]
¡û
>W1510076361
CDOI01000171
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
13334
13406
+
Thr
GGT
[ENA]
¡û
>W1510076387
CDOJ01000077
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
5735
5807
+
Thr
GGT
[ENA]
¡û
>W1510076430
CDOK01000163
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
6154
6226
+
Thr
GGT
[ENA]
¡û
>W1510076445
CDOL01000001
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
13307
13379
+
Thr
GGT
[ENA]
¡û
>C11104996
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
1830027
1829955
-
Thr
GGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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