This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.671542 (25 seq.)
>W1711294784
MABH01000177
Alphaproteobacteria
Cereibacter johrii [MABH]
4929
4855
-
Val
GAC
[ENA]
¡û
>W131058641
ANFS01000012
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
461342
461268
-
Val
GAC
[ENA]
¡û
>C019288
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
2851733
2851659
-
Val
GAC
[Ensembl]
¡û
>C019335
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
75991
75917
-
Val
GAC
[Ensembl]
¡û
>WENV170605686
FUWD010523808
[FUWD] metagenome; unknown
112
186
+
Val
GAC
[ENA]
¢þ
>W09104746
AAME01000051
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
12189
12263
+
Val
GAC
[ENA]
¡û
>W09104758
AAMF01000001
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
635498
635572
+
Val
GAC
[ENA]
¡û
>C181084415
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
3109391
3109465
+
Val
GAC
-
¡û
>C191079662
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
2792502
2792576
+
Val
GAC
-
¡û
>C191151018
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
3251350
3251276
-
Val
GAC
-
¡û
>W1910548862
FZOV01000002
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
849916
849842
-
Val
GAC
[ENA]
¡û
>C09109064
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
2850401
2850327
-
Val
GAC
[Ensembl]
¡û
>W1911491931
OAOQ01000012
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
10518
10592
+
Val
GAC
[ENA]
¡û
>W1911749438
QWGP01000004
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
271810
271736
-
Val
GAC
[ENA]
¡û
>W1911766272
QXDK01000004
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
11602
11676
+
Val
GAC
[ENA]
¡û
>W1810116289
PHOB01000120
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
6048
5974
-
Val
GAC
[ENA]
¡û
>W1810119930
PHSI01000004
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
10511
10585
+
Val
GAC
[ENA]
¡û
>W1810268873
PRDS01000001
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
469309
469383
+
Val
GAC
[ENA]
¡û
>W1810445017
PZKG01000001
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
12778
12852
+
Val
GAC
[ENA]
¡û
>W1810463842
PZZW01000005
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
11566
11640
+
Val
GAC
[ENA]
¡û
>W1810477366
QAOT01000007
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
206472
206398
-
Val
GAC
[ENA]
¡û
>W1810685973
QKZS01000001
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
592453
592379
-
Val
GAC
[ENA]
¡û
>W1810699095
QMCC01000004
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
11512
11586
+
Val
GAC
[ENA]
¡û
>W1810785204
QRBG01000031
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
11424
11498
+
Val
GAC
[ENA]
¡û
>W11160184
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
2596205
2596131
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK