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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.672862 (51 seq.)
>W1710786431
LJIY01000004
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
108289
108215
-
Asn
GTT
[ENA]
¡û
>W1710786439
LJIY01000004
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
101209
101135
-
Asn
GTT
[ENA]
¡û
>W1710786447
LJIY01000009
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
317
391
+
Asn
GTT
[ENA]
¡û
>W1710786482
LJIY01000014
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
1951
2025
+
Asn
GTT
[ENA]
¡û
>W1711704734
MSPU01000016
Bacillota
Viridibacillus sp. FSL H8-0123 [MSPU]
379
305
-
Asn
GTT
[ENA]
¡û
>W1711704786
MSPV01000030
Bacillota
Viridibacillus sp. FSL H7-0596 [MSPV]
905
979
+
Asn
GTT
[ENA]
¡û
>W1711704811
MSPW01000038
Bacillota
Viridibacillus arenosi [MSPW]
877
951
+
Asn
GTT
[ENA]
¡û
>W141072931
ASQA01000033
Bacillota
Viridibacillus arenosi FSL R5-213 [ASQA]
267690
267616
-
Asn
GTT
[ENA]
¡û
>C191056124
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
269518
269592
+
Asn
GTT
-
¡û
>C191056142
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
3433430
3433356
-
Asn
GTT
-
¡û
>C191056175
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
2964393
2964319
-
Asn
GTT
-
¡û
>C191056194
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
2962425
2962351
-
Asn
GTT
-
¡û
>W141810287
JPUW01000012
Bacillota
Lysinibacillus sp. BF-4 [JPUW]
203
277
+
Asn
GTT
[ENA]
¡û
>W141810306
JPUW01000033
Bacillota
Lysinibacillus sp. BF-4 [JPUW]
18077
18151
+
Asn
GTT
[ENA]
¡û
>W141810327
JPUW01000104
Bacillota
Lysinibacillus sp. BF-4 [JPUW]
319
245
-
Asn
GTT
[ENA]
¡û
>W1911495514
OBQC01000006
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
185123
185049
-
Asn
GTT
[ENA]
¡û
>W1911495565
OBQC01000013
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
99949
99875
-
Asn
GTT
[ENA]
¡û
>W1911495582
OBQC01000028
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
5868
5794
-
Asn
GTT
[ENA]
¡û
>W1911495585
OBQC01000031
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
2402
2328
-
Asn
GTT
[ENA]
¡û
>W1911495617
OBQC01000039
Bacillota
Ureibacillus acetophenoni JC23 [OBQC]
245
171
-
Asn
GTT
[ENA]
¡û
>W1911535217
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
1033597
1033523
-
Asn
GTT
[ENA]
¡û
>W1911535251
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
653010
652936
-
Asn
GTT
[ENA]
¡û
>W1911535271
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
650840
650766
-
Asn
GTT
[ENA]
¡û
>W1911535283
OLMT01000012
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
116782
116708
-
Asn
GTT
[ENA]
¡û
>W1911535315
OLMT01000016
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
485947
486021
+
Asn
GTT
[ENA]
¡û
>W1911748574
QWEI01000034
Bacillota
Lysinibacillus yapensis YLB-03 [QWEI]
238
312
+
Asn
GTT
[ENA]
¡û
>W1810120806
PHTX01000001
Bacillota
Viridibacillus sp. OK051 [PHTX]
1552024
1552098
+
Asn
GTT
[ENA]
¡û
>W1810471037
QAFW01000015
Bacillota
Metalysinibacillus jejuensis N25 [QAFW]
50775
50849
+
Asn
GTT
[ENA]
¡û
>W1810471060
QAFW01000033
Bacillota
Metalysinibacillus jejuensis N25 [QAFW]
24000
23926
-
Asn
GTT
[ENA]
¡û
>W1810471065
QAFW01000049
Bacillota
Metalysinibacillus jejuensis N25 [QAFW]
2124
2198
+
Asn
GTT
[ENA]
¡û
>W1810471072
QAFW01000074
Bacillota
Metalysinibacillus jejuensis N25 [QAFW]
6513
6439
-
Asn
GTT
[ENA]
¡û
>ENV09003038
ADGO01002002
Compost metagenome contig00001
768
842
+
Asn
GTT
[ENA]
¡û
>W1511316008
JPVN01000060
Bacillota
Ureibacillus manganicus DSM 26584 [JPVN]
1254
1180
-
Asn
GTT
[ENA]
¡û
>W1511316018
JPVN01000063
Bacillota
Ureibacillus manganicus DSM 26584 [JPVN]
280
354
+
Asn
GTT
[ENA]
¡û
>W1511316054
JPVO01000004
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
263
337
+
Asn
GTT
[ENA]
¡û
>W1511316059
JPVO01000005
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
227
301
+
Asn
GTT
[ENA]
¡û
>W1511316085
JPVO01000050
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
805
731
-
Asn
GTT
[ENA]
¡û
>C161042941
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
210
284
+
Asn
GTT
[Ensembl]
¡û
>C161042975
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
283197
283271
+
Asn
GTT
[Ensembl]
¡û
>C161042989
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
3423102
3423176
+
Asn
GTT
[Ensembl]
¡û
>C161042995
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
3782883
3782957
+
Asn
GTT
[Ensembl]
¡û
>W1610650286
LJIY01000004
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
108289
108215
-
Asn
GTT
[ENA]
¡û
>W1610650294
LJIY01000004
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
101209
101135
-
Asn
GTT
[ENA]
¡û
>W1610650302
LJIY01000009
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
317
391
+
Asn
GTT
[ENA]
¡û
>W1610650337
LJIY01000014
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
1951
2025
+
Asn
GTT
[ENA]
¡û
>W1710022927
AVCY01000006
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
805
731
-
Asn
GTT
[ENA]
¡û
>W1710022960
AVCY01000051
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
227
301
+
Asn
GTT
[ENA]
¡û
>W1710022963
AVCY01000052
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
263
337
+
Asn
GTT
[ENA]
¡û
>W1710022985
AVDA01000060
Bacillota
Ureibacillus manganicus DSM 26584 [AVDA]
1254
1180
-
Asn
GTT
[ENA]
¡û
>W1710022995
AVDA01000063
Bacillota
Ureibacillus manganicus DSM 26584 [AVDA]
280
354
+
Asn
GTT
[ENA]
¡û
>W1710552605
FOGY01000007
Bacillota
Psychrobacillus sp. OK032 [FOGY]
277317
277243
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK