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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.672955 (14 seq.)
>W1710996744
LQBR01000002
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
92743
92817
+
Gln
TTG
[ENA]
¡û
>W1710996746
LQBR01000002
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
98042
98116
+
Gln
TTG
[ENA]
¡û
>W1711029533
LRFG01000002
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
92743
92817
+
Gln
TTG
[ENA]
¡û
>W1711029535
LRFG01000002
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
98042
98116
+
Gln
TTG
[ENA]
¡û
>C171030136
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
40153
40227
+
Gln
TTG
-
¡û
>C171030138
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
45455
45529
+
Gln
TTG
-
¡û
>C010453
CP000155
Gammaproteobacteria
Hahella chejuensis KCTC 2396 [CP000155]
1752133
1752059
-
Gln
TTG
[Ensembl]
¡û
>WENV170389150
CETZ01250276
[CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1117
1043
-
Gln
TTG
[ENA]
¢þ
>C191132311
CP034836
Gammaproteobacteria
Hahella sp. KA22 [CP034836]
5023124
5023198
+
Gln
TTG
-
¡û
>C191143773
CP035490
Gammaproteobacteria
Hahella sp. KA22 [CP035490]
5595005
5595079
+
Gln
TTG
-
¡û
>W1610851401
LQBR01000002
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
92743
92817
+
Gln
TTG
[ENA]
¡û
>W1610851403
LQBR01000002
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
98042
98116
+
Gln
TTG
[ENA]
¡û
>W1610877801
LRFG01000002
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
92743
92817
+
Gln
TTG
[ENA]
¡û
>W1610877803
LRFG01000002
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
98042
98116
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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