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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.673472 (69 seq.)
>W131225875
AUDY01000006
Bacillota
Halobacillus kuroshimensis DSM 18393 [AUDY]
15351
15425
+
Glu
TTC
[ENA]
¡û
>W1711720797
MTIX01000002
Bacillota
Shouchella patagoniensis [MTIX]
1517174
1517100
-
Glu
TTC
[ENA]
¡û
>WENV180101136
OAOU01001350
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
2875
2801
-
Glu
TTC
[ENA]
¢þ
>WENV180101342
OAOU01031574
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
288
214
-
Glu
TTC
[ENA]
¢þ
>W141233640
BAWA01000006
Bacillota
Bacillus sp. JCM 19045 [BAWA]
519
593
+
Glu
TTC
[ENA]
¡û
>W141233657
BAWA01000011
Bacillota
Bacillus sp. JCM 19045 [BAWA]
11122
11193
+
Glu
TTC
[ENA]
¡û
>W141233663
BAWA01000012
Bacillota
Bacillus sp. JCM 19045 [BAWA]
32489
32561
+
Glu
TTC
[ENA]
¡û
>W141233696
BAWB01000003
Bacillota
Bacillus sp. JCM 19046 [BAWB]
1579
1505
-
Glu
TTC
[ENA]
¡û
>W141233702
BAWB01000004
Bacillota
Bacillus sp. JCM 19046 [BAWB]
32478
32550
+
Glu
TTC
[ENA]
¡û
>W141233735
BAWB01000094
Bacillota
Bacillus sp. JCM 19046 [BAWB]
375
449
+
Glu
TTC
[ENA]
¡û
>C181058221
CP022106
Bacillota
Halobacillus halophilus HL2HP6 [CP022106]
175551
175625
+
Glu
TTC
-
¡û
>C181058246
CP022106
Bacillota
Halobacillus halophilus HL2HP6 [CP022106]
1083296
1083370
+
Glu
TTC
-
¡û
>C181058272
CP022106
Bacillota
Halobacillus halophilus HL2HP6 [CP022106]
83019
82948
-
Glu
TTC
-
¡û
>C181065013
CP022437
Bacillota
Virgibacillus necropolis LMG 19488 [CP022437]
4152249
4152175
-
Glu
TTC
-
¡û
>C181065057
CP022437
Bacillota
Virgibacillus necropolis LMG 19488 [CP022437]
136897
136823
-
Glu
TTC
-
¡û
>W141818325
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
319795
319868
+
Glu
TTC
[ENA]
¡û
>W141818351
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
1362471
1362400
-
Glu
TTC
[ENA]
¡û
>W141818375
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
1067065
1066992
-
Glu
TTC
[ENA]
¡û
>W141818382
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
1066382
1066311
-
Glu
TTC
[ENA]
¡û
>W141818386
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
619208
619135
-
Glu
TTC
[ENA]
¡û
>W141820118
JQMR01000001
Bacillota
Carnobacterium mobile DSM 4848 [JQMR]
255570
255641
+
Glu
TTC
[ENA]
¡û
>W141820130
JQMR01000001
Bacillota
Carnobacterium mobile DSM 4848 [JQMR]
266382
266453
+
Glu
TTC
[ENA]
¡û
>W141820156
JQMR01000001
Bacillota
Carnobacterium mobile DSM 4848 [JQMR]
1442860
1442789
-
Glu
TTC
[ENA]
¡û
>W141820180
JQMR01000001
Bacillota
Carnobacterium mobile DSM 4848 [JQMR]
1163384
1163313
-
Glu
TTC
[ENA]
¡û
>W141820188
JQMR01000001
Bacillota
Carnobacterium mobile DSM 4848 [JQMR]
1162536
1162465
-
Glu
TTC
[ENA]
¡û
>W1910437718
FVYZ01000002
Bacillota
Halobacillus salinus Marseille-P2480 [FVYZ]
337893
337964
+
Glu
TTC
[ENA]
¡û
>W1910437866
FVZB01000002
Bacillota
Halobacillus hunanensis Marseille-P3457 [FVZB]
15823
15894
+
Glu
TTC
[ENA]
¡û
>W1910437881
FVZB01000005
Bacillota
Halobacillus hunanensis Marseille-P3457 [FVZB]
310304
310376
+
Glu
TTC
[ENA]
¡û
>W1910930220
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
2675420
2675494
+
Glu
TTC
[ENA]
¡û
>W1910930230
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
2407932
2407858
-
Glu
TTC
[ENA]
¡û
>W1911504028
OESS01000002
Bacillota
Halobacillus sp. Marseille-P3879 [OESS]
588
662
+
Glu
TTC
[ENA]
¡û
>W1911504076
OESS01000006
Bacillota
Halobacillus sp. Marseille-P3879 [OESS]
15609
15680
+
Glu
TTC
[ENA]
¡û
>W1810057823
PDIZ01000002
Bacillota
Bacillus sp. es.036 [PDIZ]
37309
37383
+
Glu
TTC
[ENA]
¡û
>W1810057838
PDIZ01000003
Bacillota
Bacillus sp. es.036 [PDIZ]
127871
127945
+
Glu
TTC
[ENA]
¡û
>W1810759352
QPJJ01000003
Bacillota
Saliterribacillus persicus DSM 27696 [QPJJ]
348778
348704
-
Glu
TTC
[ENA]
¡û
>W1810759367
QPJJ01000004
Bacillota
Saliterribacillus persicus DSM 27696 [QPJJ]
284104
284030
-
Glu
TTC
[ENA]
¡û
>W1810759376
QPJJ01000004
Bacillota
Saliterribacillus persicus DSM 27696 [QPJJ]
1063
989
-
Glu
TTC
[ENA]
¡û
>W1511657551
LELK01000005
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
804
878
+
Glu
TTC
[ENA]
¡û
>W1511657567
LELK01000006
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
83815
83741
-
Glu
TTC
[ENA]
¡û
>W1511657577
LELK01000006
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
1730
1656
-
Glu
TTC
[ENA]
¡û
>W1511657592
LELK01000012
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
33845
33919
+
Glu
TTC
[ENA]
¡û
>C121018414
HE717023
Bacillota
Halobacillus halophilus DSM 2266 type strain: DSM 2266 [HE717023]
175621
175695
+
Glu
TTC
[Ensembl]
¡û
>C121018439
HE717023
Bacillota
Halobacillus halophilus DSM 2266 type strain: DSM 2266 [HE717023]
1083436
1083510
+
Glu
TTC
[Ensembl]
¡û
>C121018465
HE717023
Bacillota
Halobacillus halophilus DSM 2266 type strain: DSM 2266 [HE717023]
83089
83018
-
Glu
TTC
[Ensembl]
¡û
>C161028469
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
2103456
2103527
+
Glu
TTC
[Ensembl]
¡û
>C161028493
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
2371066
2371137
+
Glu
TTC
[Ensembl]
¡û
>C161028500
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
2371785
2371856
+
Glu
TTC
[Ensembl]
¡û
>C161028504
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
708291
708220
-
Glu
TTC
[Ensembl]
¡û
>C161028516
CP010796
Bacillota
Carnobacterium sp. CP1 [CP010796]
693157
693086
-
Glu
TTC
[Ensembl]
¡û
>W1610042214
BAXP01000008
Bacillota
Bacillus sp. JCM 19035 [BAXP]
228
302
+
Glu
TTC
[ENA]
¡û
>W1610042230
BAXP01000011
Bacillota
Bacillus sp. JCM 19035 [BAXP]
140745
140673
-
Glu
TTC
[ENA]
¡û
>W1610042241
BAXP01000021
Bacillota
Bacillus sp. JCM 19035 [BAXP]
1660
1586
-
Glu
TTC
[ENA]
¡û
>W1610042252
BAXP01000037
Bacillota
Bacillus sp. JCM 19035 [BAXP]
466
395
-
Glu
TTC
[ENA]
¡û
>W1710039308
BAXP01000008
Bacillota
Bacillus sp. JCM 19035 [BAXP]
228
302
+
Glu
TTC
[ENA]
¡û
>W1710039324
BAXP01000011
Bacillota
Bacillus sp. JCM 19035 [BAXP]
140745
140673
-
Glu
TTC
[ENA]
¡û
>W1710039335
BAXP01000021
Bacillota
Bacillus sp. JCM 19035 [BAXP]
1660
1586
-
Glu
TTC
[ENA]
¡û
>W1710039346
BAXP01000037
Bacillota
Bacillus sp. JCM 19035 [BAXP]
466
395
-
Glu
TTC
[ENA]
¡û
>W1710543765
FOAH01000008
Bacillota
Carnobacterium iners [FOAH]
80850
80777
-
Glu
TTC
[ENA]
¡û
>W1710543784
FOAH01000037
Bacillota
Carnobacterium iners [FOAH]
1030
1101
+
Glu
TTC
[ENA]
¡û
>W1710543802
FOAH01000051
Bacillota
Carnobacterium iners [FOAH]
6621
6550
-
Glu
TTC
[ENA]
¡û
>W1710543811
FOAH01000051
Bacillota
Carnobacterium iners [FOAH]
5699
5628
-
Glu
TTC
[ENA]
¡û
>W1710561580
FOOG01000026
Bacillota
Halobacillus alkaliphilus [FOOG]
552
626
+
Glu
TTC
[ENA]
¡û
>W1710561609
FOOG01000062
Bacillota
Halobacillus alkaliphilus [FOOG]
598
527
-
Glu
TTC
[ENA]
¡û
>W1710568509
FOTR01000002
Bacillota
Gracilibacillus orientalis [FOTR]
564485
564411
-
Glu
TTC
[ENA]
¡û
>W1710608722
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
1795670
1795743
+
Glu
TTC
[ENA]
¡û
>W1710608736
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
2099529
2099456
-
Glu
TTC
[ENA]
¡û
>W1710608760
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
410187
410116
-
Glu
TTC
[ENA]
¡û
>W1710608783
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
55535
55464
-
Glu
TTC
[ENA]
¡û
>W1710608791
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
54722
54651
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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