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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.673628 (63 seq.)
>W1710797127
LJST01000253
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
9409
9335
-
His
GTG
[ENA]
¡û
>W1710797128
LJST01000253
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
9284
9210
-
His
GTG
[ENA]
¡û
>W1711339779
MCAP01000004
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
55225
55299
+
His
GTG
[ENA]
¡û
>W1711339780
MCAP01000004
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
55322
55396
+
His
GTG
[ENA]
¡û
>W1711688864
MSDO01000054
Gammaproteobacteria
Salinicola socius [MSDO]
540
466
-
His
GTG
[ENA]
¡û
>W1711688865
MSDO01000054
Gammaproteobacteria
Salinicola socius [MSDO]
427
353
-
His
GTG
[ENA]
¡û
>W1711688876
MSDO01000084
Gammaproteobacteria
Salinicola socius [MSDO]
256
182
-
His
GTG
[ENA]
¡û
>W1711688915
MSDP01000011
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
127745
127819
+
His
GTG
[ENA]
¡û
>W1711688916
MSDP01000011
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
127844
127918
+
His
GTG
[ENA]
¡û
>W1712082106
NHOU01000006
Gammaproteobacteria
Salinicola salarius [NHOU]
146528
146602
+
His
GTG
[ENA]
¡û
>W1712082107
NHOU01000006
Gammaproteobacteria
Salinicola salarius [NHOU]
146625
146699
+
His
GTG
[ENA]
¡û
>C171100924
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
1605862
1605936
+
His
GTG
-
¡û
>C171100925
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
1606005
1606079
+
His
GTG
-
¡û
>C171117495
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
3102505
3102579
+
His
GTG
-
¡û
>C171118033
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
134183
134109
-
His
GTG
-
¡û
>W131044845
AMQY01000014
Gammaproteobacteria
Halomonas jeotgali Hwa [AMQY]
324848
324922
+
His
GTG
[ENA]
¡û
>W131044846
AMQY01000014
Gammaproteobacteria
Halomonas jeotgali Hwa [AMQY]
324995
325069
+
His
GTG
[ENA]
¡û
>W131180829
ARNK01000070
Gammaproteobacteria
Kushneria aurantia DSM 21353 [ARNK]
6539
6613
+
His
GTG
[ENA]
¡û
>WENV181234406
OFEU01000101
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
105967
106041
+
His
GTG
[ENA]
¢þ
>WENV181234407
OFEU01000101
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
106092
106166
+
His
GTG
[ENA]
¢þ
>WENV170176222
CEOS01052330
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
634
708
+
His
GTG
[ENA]
¢þ
>WENV170679811
LFCJ01000595
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
14012
14086
+
His
GTG
[ENA]
¢þ
>WENV170683635
LFIK01017227
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
4985
5059
+
His
GTG
[ENA]
¢þ
>C181044738
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
1605862
1605936
+
His
GTG
-
¡û
>C181044739
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
1606005
1606079
+
His
GTG
-
¡û
>C181088251
CP023656
Gammaproteobacteria
Halomonas hydrothermalis Y2 [CP023656]
3311546
3311472
-
His
GTG
-
¡û
>W141727049
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
1781100
1781026
-
His
GTG
[ENA]
¡û
>W1911411693
NWUX01000001
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
421250
421324
+
His
GTG
[ENA]
¡û
>W1911411694
NWUX01000001
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
421393
421467
+
His
GTG
[ENA]
¡û
>W1911411695
NWUX01000001
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
421536
421610
+
His
GTG
[ENA]
¡û
>W1810144767
PINZ01000001
Gammaproteobacteria
Halomonas sp. 141 [PINZ]
161641
161715
+
His
GTG
[ENA]
¡û
>W1810144768
PINZ01000001
Gammaproteobacteria
Halomonas sp. 141 [PINZ]
161748
161822
+
His
GTG
[ENA]
¡û
>W1810363660
PVRV01000020
Gammaproteobacteria
Phytohalomonas tamaricis R4HLG17 [PVRV]
64427
64353
-
His
GTG
[ENA]
¡û
>W1810444117
PZJL01000006
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
175392
175466
+
His
GTG
[ENA]
¡û
>W1810444118
PZJL01000006
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
175491
175565
+
His
GTG
[ENA]
¡û
>W1810444175
PZJM01000004
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
189516
189590
+
His
GTG
[ENA]
¡û
>W1810444176
PZJM01000004
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
189615
189689
+
His
GTG
[ENA]
¡û
>W1810444226
PZJN01000003
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
162223
162297
+
His
GTG
[ENA]
¡û
>W1810444227
PZJN01000003
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
162322
162396
+
His
GTG
[ENA]
¡û
>W1810444424
PZJQ01000004
Gammaproteobacteria
Salinicola halimionae CPA60 [PZJQ]
1444411
1444337
-
His
GTG
[ENA]
¡û
>W1810444425
PZJQ01000004
Gammaproteobacteria
Salinicola halimionae CPA60 [PZJQ]
1444305
1444231
-
His
GTG
[ENA]
¡û
>W1810444468
PZJR01000003
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
622375
622301
-
His
GTG
[ENA]
¡û
>W1810444469
PZJR01000003
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
622262
622188
-
His
GTG
[ENA]
¡û
>W1810444565
PZJS01000008
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
1054283
1054209
-
His
GTG
[ENA]
¡û
>W1810444566
PZJS01000008
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
1054170
1054096
-
His
GTG
[ENA]
¡û
>W1810444596
PZJT01000006
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
346201
346127
-
His
GTG
[ENA]
¡û
>W1810444597
PZJT01000006
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
346104
346030
-
His
GTG
[ENA]
¡û
>W1810444734
PZJV01000001
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
544727
544653
-
His
GTG
[ENA]
¡û
>W1810444801
PZJW01000006
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
175738
175812
+
His
GTG
[ENA]
¡û
>W1810444802
PZJW01000006
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
175837
175911
+
His
GTG
[ENA]
¡û
>WENV029765
AACY021227207
Marine microbial communities from Global Ocean Sampling (GOS)
107
31
-
His
GTG
[ENA]
>W1511398574
JTDR01000005
Gammaproteobacteria
Halomonas hydrothermalis MTCC 5445 [JTDR]
105139
105065
-
His
GTG
[ENA]
¡û
>C161109483
LT593974
Gammaproteobacteria
Halomonas sp. HL-93 [LT593974]
2067445
2067371
-
His
GTG
-
¡û
>C161109484
LT593974
Gammaproteobacteria
Halomonas sp. HL-93 [LT593974]
2067320
2067246
-
His
GTG
-
¡û
>W121067802
AJTS01000015
Gammaproteobacteria
Halomonas stevensii S18214 [AJTS]
91723
91797
+
His
GTG
[ENA]
¡û
>W121067803
AJTS01000015
Gammaproteobacteria
Halomonas stevensii S18214 [AJTS]
91830
91904
+
His
GTG
[ENA]
¡û
>W1610661084
LJST01000253
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
9409
9335
-
His
GTG
[ENA]
¡û
>W1610661085
LJST01000253
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
9284
9210
-
His
GTG
[ENA]
¡û
>W1710521349
FNGI01000001
Gammaproteobacteria
Halomonas muralis [FNGI]
509196
509270
+
His
GTG
[ENA]
¡û
>W1710558487
FOLY01000001
Gammaproteobacteria
Kushneria avicenniae [FOLY]
243348
243274
-
His
GTG
[ENA]
¡û
>W1710719172
LFGS01000006
Gammaproteobacteria
Halomonas sp. BC1 [LFGS]
106264
106190
-
His
GTG
[ENA]
¡û
>W1710719207
LFGT01000003
Gammaproteobacteria
Halomonas sp. BC2 [LFGT]
73741
73815
+
His
GTG
[ENA]
¡û
>W1710719208
LFGT01000003
Gammaproteobacteria
Halomonas sp. BC2 [LFGT]
73848
73922
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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