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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67366 (67 seq.)
>W1711078284
LSMS01000181
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
974
888
-
Leu
TAA
[ENA]
¡û
>W1711078286
LSMS01000181
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
695
609
-
Leu
TAA
[ENA]
¡û
>W1711767465
MUZV01000008
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
44183
44269
+
Leu
TAA
[ENA]
¡û
>W1711767467
MUZV01000008
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
44462
44548
+
Leu
TAA
[ENA]
¡û
>W1711947520
NBOD01000010
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
41404
41490
+
Leu
TAA
[ENA]
¡û
>W1711947522
NBOD01000010
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
41683
41769
+
Leu
TAA
[ENA]
¡û
>W1711947581
NBOE01000008
Gammaproteobacteria
Colwellia polaris [NBOE]
160368
160282
-
Leu
TAA
[ENA]
¡û
>W1711947584
NBOE01000008
Gammaproteobacteria
Colwellia polaris [NBOE]
159952
159866
-
Leu
TAA
[ENA]
¡û
>W1711947586
NBOE01000008
Gammaproteobacteria
Colwellia polaris [NBOE]
159668
159582
-
Leu
TAA
[ENA]
¡û
>W1711947709
NBOG01000003
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
15544
15630
+
Leu
TAA
[ENA]
¡û
>W1711947712
NBOG01000003
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
15953
16039
+
Leu
TAA
[ENA]
¡û
>W1711947714
NBOG01000003
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
16249
16335
+
Leu
TAA
[ENA]
¡û
>C171034485
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
4627741
4627655
-
Leu
TAA
-
¡û
>C171034488
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
4627321
4627235
-
Leu
TAA
-
¡û
>C171034490
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
4627012
4626926
-
Leu
TAA
-
¡û
>WENV182540801
OJAP01010754
[OJAP] seawater metagenome; Sea water
348
434
+
Leu
TAA
[ENA]
¢þ
>WENV182542090
OJAV01002451
[OJAV] seawater metagenome; Sea water
3313
3399
+
Leu
TAA
[ENA]
¢þ
>WENV182547781
OJBT01004294
[OJBT] seawater metagenome; Sea water
1107
1193
+
Leu
TAA
[ENA]
¢þ
>WENV182552438
OJCK01000080
[OJCK] seawater metagenome; Sea water
50616
50530
-
Leu
TAA
[ENA]
¢þ
>WENV182552440
OJCK01000080
[OJCK] seawater metagenome; Sea water
50327
50241
-
Leu
TAA
[ENA]
¢þ
>WENV182554617
OJCW01000149
[OJCW] seawater metagenome; Sea water
27733
27647
-
Leu
TAA
[ENA]
¢þ
>WENV182557046
OJDI01000509
[OJDI] seawater metagenome; Sea water
12493
12407
-
Leu
TAA
[ENA]
¢þ
>WENV182557048
OJDI01000509
[OJDI] seawater metagenome; Sea water
12204
12118
-
Leu
TAA
[ENA]
¢þ
>WENV182557700
OJDK01002696
[OJDK] seawater metagenome; Sea water
200
114
-
Leu
TAA
[ENA]
¢þ
>WENV182557909
OJDL01000463
[OJDL] seawater metagenome; Sea water
14128
14042
-
Leu
TAA
[ENA]
¢þ
>WENV182565873
OJEI01000611
[OJEI] seawater metagenome; Sea water
6717
6803
+
Leu
TAA
[ENA]
¢þ
>WENV182565875
OJEI01000611
[OJEI] seawater metagenome; Sea water
7006
7092
+
Leu
TAA
[ENA]
¢þ
>WENV182566200
OJEJ01000801
[OJEJ] seawater metagenome; Sea water
200
114
-
Leu
TAA
[ENA]
¢þ
>WENV182567122
OJEN01003631
[OJEN] seawater metagenome; Sea water
2652
2738
+
Leu
TAA
[ENA]
¢þ
>WENV182567542
OJEO01005659
[OJEO] seawater metagenome; Sea water
1614
1528
-
Leu
TAA
[ENA]
¢þ
>WENV182568040
OJEP01018840
[OJEP] seawater metagenome; Sea water
188
274
+
Leu
TAA
[ENA]
¢þ
>WENV182569643
OJFA01001678
[OJFA] seawater metagenome; Sea water
569
483
-
Leu
TAA
[ENA]
¢þ
>WENV182569646
OJFA01001678
[OJFA] seawater metagenome; Sea water
209
123
-
Leu
TAA
[ENA]
¢þ
>WENV182573000
OJFO01016325
[OJFO] seawater metagenome; Sea water
326
240
-
Leu
TAA
[ENA]
¢þ
>WENV182573123
OJFP01000137
[OJFP] seawater metagenome; Sea water
6786
6872
+
Leu
TAA
[ENA]
¢þ
>WENV182575016
OJFS01020887
[OJFS] seawater metagenome; Sea water
7
93
+
Leu
TAA
[ENA]
¢þ
>WENV182575212
OJFU01001009
[OJFU] seawater metagenome; Sea water
638
552
-
Leu
TAA
[ENA]
¢þ
>WENV182575214
OJFU01001009
[OJFU] seawater metagenome; Sea water
354
268
-
Leu
TAA
[ENA]
¢þ
>WENV182576029
OJFX01001630
[OJFX] seawater metagenome; Sea water
135
221
+
Leu
TAA
[ENA]
¢þ
>WENV182580191
OJGU01011528
[OJGU] seawater metagenome; Sea water
946
860
-
Leu
TAA
[ENA]
¢þ
>WENV182581282
OJGX01002075
[OJGX] seawater metagenome; Sea water
469
383
-
Leu
TAA
[ENA]
¢þ
>WENV182584324
OJHG01000008
[OJHG] seawater metagenome; Sea water
59595
59681
+
Leu
TAA
[ENA]
¢þ
>WENV182585076
OJHH01000780
[OJHH] seawater metagenome; Sea water
10724
10638
-
Leu
TAA
[ENA]
¢þ
>WENV182586952
OJHK01018127
[OJHK] seawater metagenome; Sea water
141
227
+
Leu
TAA
[ENA]
¢þ
>WENV182587487
OJHM01012649
[OJHM] seawater metagenome; Sea water
695
781
+
Leu
TAA
[ENA]
¢þ
>WENV182588042
OJHO01001391
[OJHO] seawater metagenome; Sea water
3414
3500
+
Leu
TAA
[ENA]
¢þ
>WENV182591572
OJIO01000529
[OJIO] seawater metagenome; Sea water
6440
6354
-
Leu
TAA
[ENA]
¢þ
>WENV182594004
OJIV01000039
[OJIV] seawater metagenome; Sea water
6788
6874
+
Leu
TAA
[ENA]
¢þ
>WENV183055372
OLGX01011424
[OLGX] seawater metagenome; Sea water
39
125
+
Leu
TAA
[ENA]
¢þ
>WENV183057949
OLHN01000054
[OLHN] seawater metagenome; Sea water
43403
43317
-
Leu
TAA
[ENA]
¢þ
>C181169927
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1736260
1736346
+
Leu
TAA
-
¡û
>C181169930
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1736675
1736761
+
Leu
TAA
-
¡û
>W1911770239
QXIO01000009
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
150525
150439
-
Leu
TAA
[ENA]
¡û
>W1911770241
QXIO01000009
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
150228
150142
-
Leu
TAA
[ENA]
¡û
>W1911811060
QZCH01000043
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
21961
21875
-
Leu
TAA
[ENA]
¡û
>W1810887032
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
482826
482740
-
Leu
TAA
[ENA]
¡û
>W1810887114
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2457983
2457897
-
Leu
TAA
[ENA]
¡û
>W1810887116
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2457674
2457588
-
Leu
TAA
[ENA]
¡û
>W1810887119
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2457219
2457133
-
Leu
TAA
[ENA]
¡û
>W1810887123
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2456721
2456635
-
Leu
TAA
[ENA]
¡û
>W1810887207
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2258992
2258906
-
Leu
TAA
[ENA]
¡û
>W1810887209
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2258696
2258610
-
Leu
TAA
[ENA]
¡û
>W1810887212
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2258258
2258172
-
Leu
TAA
[ENA]
¡û
>W1810887216
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2257763
2257677
-
Leu
TAA
[ENA]
¡û
>W1610917300
LSMS01000181
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
974
888
-
Leu
TAA
[ENA]
¡û
>W1610917302
LSMS01000181
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
695
609
-
Leu
TAA
[ENA]
¡û
>W1710553211
FOHK01000006
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
236
150
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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