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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67484 (20 seq.)
>C171089757
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
1746666
1746752
+
Tyr
GTA
-
¡û
>W131220673
ATZQ01000058
Betaproteobacteria
beta proteobacterium SCGC AAA027-K21 [ATZQ]
1359
1445
+
Tyr
GTA
[ENA]
¡û
>W141139322
AWNL01000079
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
7873
7959
+
Tyr
GTA
[ENA]
¡û
>WENV170620584
FUWD013034578
[FUWD] metagenome; unknown
1014
1100
+
Tyr
GTA
[ENA]
¢þ
>WENV170628724
FUWD013251953
[FUWD] metagenome; unknown
1014
1100
+
Tyr
GTA
[ENA]
¢þ
>C181169415
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
3113670
3113584
-
Tyr
GTA
-
¡û
>C181227136
LT907988
Betaproteobacteria
Orrella dioscoreae [LT907988]
140101
140015
-
Tyr
GTA
-
¡û
>C191012209
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
5503
5589
+
Tyr
GTA
-
¡û
>W1911636083
PVTV01000012
Betaproteobacteria
Jezberella montanilacus MWH-P2sevCIIIb [PVTV]
141008
141094
+
Tyr
GTA
[ENA]
¡û
>W1810580287
QETA01000008
Betaproteobacteria
Corticimicrobacter populi 3d-2-2 [QETA]
157127
157213
+
Tyr
GTA
[ENA]
¡û
>SRA1052318
SRR035098.181346
454 Sequencing (SRP001819)
267
353
+
Tyr
GTA
[SRA]
>SRA1053599
SRR035098.449016
454 Sequencing (SRP001819)
92
178
+
Tyr
GTA
[SRA]
>C161109062
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
1312954
1313040
+
Tyr
GTA
[Ensembl]
¡û
>WENV057409
AACY023293864
Marine microbial communities from Global Ocean Sampling (GOS)
793
881
+
Tyr
GTA
[ENA]
>W1610447557
FKBR01000038
Betaproteobacteria
Bordetella trematum [FKBR]
466
380
-
Tyr
GTA
[ENA]
¡û
>W1610447672
FKBT01000041
Betaproteobacteria
Bordetella trematum [FKBT]
17173
17259
+
Tyr
GTA
[ENA]
¡û
>W1610506807
FLRC01000052
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
199199
199113
-
Tyr
GTA
[ENA]
¡û
>W1710447185
FKBR01000038
Betaproteobacteria
Bordetella trematum [FKBR]
466
380
-
Tyr
GTA
[ENA]
¡û
>W1710447300
FKBT01000041
Betaproteobacteria
Bordetella trematum [FKBT]
17173
17259
+
Tyr
GTA
[ENA]
¡û
>W1710499028
FLRC01000052
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
199199
199113
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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