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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.675863 (27 seq.)
>W131161194
AQXL01000036
Bacillota
Effusibacillus pohliae DSM 22757 [AQXL]
148
222
+
Gly
GCC
[ENA]
¡û
>C181109241
CP024955
Bacillota
Kyrpidia spormannii EA-1 [CP024955]
1324120
1324194
+
Gly
GCC
-
¡û
>C181109269
CP024955
Bacillota
Kyrpidia spormannii EA-1 [CP024955]
1485026
1485100
+
Gly
GCC
-
¡û
>W09108202
ABTB01000015
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [ABTB]
66602
66528
-
Gly
GCC
[ENA]
¡û
>W09108211
ABTB01000019
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [ABTB]
10898
10824
-
Gly
GCC
[ENA]
¡û
>W09118157
ACCS01000019
Bacillota
Alicyclobacillus acidocaldarius LAA1 [ACCS]
44826
44900
+
Gly
GCC
[ENA]
¡û
>W09118186
ACCS01000054
Bacillota
Alicyclobacillus acidocaldarius LAA1 [ACCS]
2699
2625
-
Gly
GCC
[ENA]
¡û
>ENV09001821
ACQI01011205
Hydrothermal vent metagenome LCHCB.C1
98
172
+
Gly
GCC
[ENA]
¡û
>C10100035
CP001727
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [CP001727]
2270445
2270371
-
Gly
GCC
[Ensembl]
¡û
>C10100056
CP001727
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [CP001727]
294409
294335
-
Gly
GCC
[Ensembl]
¡û
>C10102437
CP002017
Bacillota
Kyrpidia tusciae DSM 2912 [CP002017]
1954059
1953985
-
Gly
GCC
[Ensembl]
¡û
>C10102466
CP002017
Bacillota
Kyrpidia tusciae DSM 2912 [CP002017]
1797674
1797600
-
Gly
GCC
[Ensembl]
¡û
>C11100035
CP002902
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 [CP002902]
2229074
2229000
-
Gly
GCC
[Ensembl]
¡û
>C11100057
CP002902
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 [CP002902]
332201
332127
-
Gly
GCC
[Ensembl]
¡û
>W1610068842
BCRQ01000019
Bacillota
Alicyclobacillus sendaiensis NBRC 100866 [BCRQ]
21192
21266
+
Gly
GCC
[ENA]
¡û
>W1610068875
BCRQ01000104
Bacillota
Alicyclobacillus sendaiensis NBRC 100866 [BCRQ]
3912
3838
-
Gly
GCC
[ENA]
¡û
>W1610069127
BCSG01000001
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
87447
87521
+
Gly
GCC
[ENA]
¡û
>W1610069152
BCSG01000019
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
2331
2257
-
Gly
GCC
[ENA]
¡û
>W1610069178
BCSG01000060
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
6025
5951
-
Gly
GCC
[ENA]
¡û
>W1710066215
BCRQ01000019
Bacillota
Alicyclobacillus sendaiensis NBRC 100866 [BCRQ]
21192
21266
+
Gly
GCC
[ENA]
¡û
>W1710066248
BCRQ01000104
Bacillota
Alicyclobacillus sendaiensis NBRC 100866 [BCRQ]
3912
3838
-
Gly
GCC
[ENA]
¡û
>W1710066500
BCSG01000001
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
87447
87521
+
Gly
GCC
[ENA]
¡û
>W1710066525
BCSG01000019
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
2331
2257
-
Gly
GCC
[ENA]
¡û
>W1710066551
BCSG01000060
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
6025
5951
-
Gly
GCC
[ENA]
¡û
>W1710599231
FTOO01000004
Bacillota
Alicyclobacillus vulcanalis [FTOO]
17979
17905
-
Gly
GCC
[ENA]
¡û
>W1710599257
FTOO01000017
Bacillota
Alicyclobacillus vulcanalis [FTOO]
23985
23911
-
Gly
GCC
[ENA]
¡û
>W1710599268
FTOO01000021
Bacillota
Alicyclobacillus vulcanalis [FTOO]
1046
1120
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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