This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67726 (25 seq.)
>WENV180360990
OBNU01078140
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
306
220
-
Leu
CAG
[ENA]
¢þ
>W141055765
AOSK01000046
Alphaproteobacteria
Rubellimicrobium mesophilum DSM 19309 [AOSK]
9563
9649
+
Leu
CAG
[ENA]
¡û
>W141063303
APGJ01000003
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
298775
298689
-
Leu
CAG
[ENA]
¡û
>W141230423
BATB01000006
Alphaproteobacteria
Limimaricola cinnabarinus LL-001 [BATB]
68539
68453
-
Leu
CAG
[ENA]
¡û
>WENV182561426
OJDW01000037
[OJDW] seawater metagenome; Sea water
41724
41638
-
Leu
CAG
[ENA]
¢þ
>WENV182566893
OJEN01000005
[OJEN] seawater metagenome; Sea water
65057
64971
-
Leu
CAG
[ENA]
¢þ
>WENV182577272
OJGD01000178
[OJGD] seawater metagenome; Sea water
14475
14561
+
Leu
CAG
[ENA]
¢þ
>WENV182587266
OJHM01000076
[OJHM] seawater metagenome; Sea water
27786
27872
+
Leu
CAG
[ENA]
¢þ
>WENV183056907
OLHK01000009
[OLHK] seawater metagenome; Sea water
45664
45750
+
Leu
CAG
[ENA]
¢þ
>WENV170555062
CXWK01094587
[CXWK] wastewater metagenome; activated sludge
1131
1217
+
Leu
CAG
[ENA]
¢þ
>WENV170974178
MTKY01055024
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2342
2256
-
Leu
CAG
[ENA]
¢þ
>WENV170978683
MTKZ01058170
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
267
181
-
Leu
CAG
[ENA]
¢þ
>C181158369
CP027665
Alphaproteobacteria
Pukyongiella litopenaei SH-1 [CP027665]
1785958
1786044
+
Leu
CAG
-
¡û
>W1910443278
FWFY01000002
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
391639
391553
-
Leu
CAG
[ENA]
¡û
>W1910500576
FXZK01000009
Alphaproteobacteria
Flavimaricola marinus CECT 8899 [FXZK]
44192
44106
-
Leu
CAG
[ENA]
¡û
>W1911189723
NQWH01000024
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
46972
47058
+
Leu
CAG
[ENA]
¡û
>W1911535558
OMKW01000001
Alphaproteobacteria
Pontivivens insulae CeCT 8812 [OMKW]
734100
734186
+
Leu
CAG
[ENA]
¡û
>W1810787210
QRDO01000002
Alphaproteobacteria
Pontivivens insulae DSM 103361 [QRDO]
734263
734349
+
Leu
CAG
[ENA]
¡û
>C11111808
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2081532
2081618
+
Leu
CAG
[Ensembl]
¡û
>C11111873
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2367506
2367592
+
Leu
CAG
[Ensembl]
¡û
>C161047266
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
2472033
2472119
+
Leu
CAG
-
¡û
>C161099993
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2470945
2471031
+
Leu
CAG
-
¡û
>W1710512396
FMZJ01000017
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
50984
50898
-
Leu
CAG
[ENA]
¡û
>W1710514199
FNAT01000003
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
289687
289601
-
Leu
CAG
[ENA]
¡û
>W1710587508
FQYO01000004
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
200909
200995
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK