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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.681840 (44 seq.)
>WENV180345840
OBLN01007430
[OBLN] sediment metagenome; sediment
995
921
-
Asn
GTT
[ENA]
¢þ
>WENV183515256
OMKS01053884
[OMKS] sediment metagenome; hot spring sediment
294
368
+
Asn
GTT
[ENA]
¢þ
>WENV170012766
ASRO01000236
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2763
2689
-
Asn
GTT
[ENA]
¢þ
>WENV170012851
ASRP01001525
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2081
2155
+
Asn
GTT
[ENA]
¢þ
>WENV170012946
ASRQ01000145
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2105
2179
+
Asn
GTT
[ENA]
¢þ
>WENV170014496
AYRG01003268
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
8
82
+
Asn
GTT
[ENA]
¢þ
>WENV170575808
FPHP01000041
[FPHP] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
986
912
-
Asn
GTT
[ENA]
¢þ
>WENV170575809
FPHP01000044
[FPHP] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
74851
74777
-
Asn
GTT
[ENA]
¢þ
>WENV170646423
JQGR01003103
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
307
233
-
Asn
GTT
[ENA]
¢þ
>WENV170657544
JTFP01000893
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
18
92
+
Asn
GTT
[ENA]
¢þ
>WENV170658407
JTFP01105228
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
85
11
-
Asn
GTT
[ENA]
¢þ
>C181197002
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1906097
1906023
-
Asn
GTT
-
¡û
>C181197003
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1905991
1905917
-
Asn
GTT
-
¡û
>C181197004
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1905890
1905816
-
Asn
GTT
-
¡û
>C191084500
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
1923053
1922979
-
Asn
GTT
-
¡û
>C191084667
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940758
1940684
-
Asn
GTT
-
¡û
>C191084668
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940652
1940578
-
Asn
GTT
-
¡û
>C191084669
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1940552
1940478
-
Asn
GTT
-
¡û
>W1911413057
NWVW01000007
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39949
39875
-
Asn
GTT
[ENA]
¡û
>W1911413058
NWVW01000007
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39843
39769
-
Asn
GTT
[ENA]
¡û
>W1911413059
NWVW01000007
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39743
39669
-
Asn
GTT
[ENA]
¡û
>W1911413118
NWVX01000019
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16267
16341
+
Asn
GTT
[ENA]
¡û
>W1911413119
NWVX01000019
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16373
16447
+
Asn
GTT
[ENA]
¡û
>W1911413120
NWVX01000019
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16473
16547
+
Asn
GTT
[ENA]
¡û
>W1911419395
NXAO01000063
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
21461
21535
+
Asn
GTT
[ENA]
¡û
>W1911419396
NXAO01000063
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
21567
21641
+
Asn
GTT
[ENA]
¡û
>W1911419397
NXAO01000063
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
21667
21741
+
Asn
GTT
[ENA]
¡û
>W1911424163
NXFY01000004
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
70219
70145
-
Asn
GTT
[ENA]
¡û
>W1911426262
NXIF01000013
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
33891
33817
-
Asn
GTT
[ENA]
¡û
>W1911426263
NXIF01000013
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
33785
33711
-
Asn
GTT
[ENA]
¡û
>W1911426264
NXIF01000013
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
33684
33610
-
Asn
GTT
[ENA]
¡û
>W1911576282
PDJX01000003
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
110314
110240
-
Asn
GTT
[ENA]
¡û
>W1911576337
PDJY01000001
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
33826
33752
-
Asn
GTT
[ENA]
¡û
>W1911576338
PDJY01000001
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
33720
33646
-
Asn
GTT
[ENA]
¡û
>W1911576339
PDJY01000001
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
33620
33546
-
Asn
GTT
[ENA]
¡û
>W1911576488
PDKC01000008
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
83540
83614
+
Asn
GTT
[ENA]
¡û
>W1911576648
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
447094
447020
-
Asn
GTT
[ENA]
¡û
>W1911576650
PDKG01000001
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
446912
446838
-
Asn
GTT
[ENA]
¡û
>W1810295934
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4217
4143
-
Asn
GTT
[ENA]
¡û
>W1810295935
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4111
4037
-
Asn
GTT
[ENA]
¡û
>W1810295936
PTIW01000038
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
4011
3937
-
Asn
GTT
[ENA]
¡û
>W1710602847
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10330
10256
-
Asn
GTT
[ENA]
¡û
>W1710602848
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10224
10150
-
Asn
GTT
[ENA]
¡û
>W1710602849
FUYO01000034
Campylobacterota
Malaciobacter marinus [FUYO]
10124
10050
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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